Using a Random Walk to simulate the foraging
- Slides: 64
Using a “Random Walk” to simulate the foraging behaviour of Pieris rapae http: //www. oulu. fi/ Jim Barritt Supervised and helped by Dr Stephen Hartley, Dr Marcus Frean, Marc Hasenbank Victoria University, Wellington School of Biological Sciences, Victoria University, Wellington © Jim Barritt 2006
Talk outline • Background • Theory • Simulation http: //www. oulu. fi/ • Results • Conclusion / Future work 1 School of Biological Sciences, Victoria University, Wellington © Jim Barritt 2006
Background • Part of a project investigating insect foraging interactions (Pieris rapae) - Dr. Stephen Hartley, Marc Hasenbank - Session 15 - “Egg laying on patchy resources and the importance of spatial scale” • Simulation in conjunction with field studies 2 School of Biological Sciences, Victoria University, Wellington © Jim Barritt 2006
Theory - the Oviposition Question Which cabbage ? Pieris rapae 3 School of Biological Sciences, Victoria University, Wellington © Jim Barritt 2006
Theory - Resource concentration ? • Is there a relationship between eggs per plant and plant density ? - - Concentration: Higher plant density should provide more information (e. g. olfactory cues) so animals are expected to locate dense patches easily and remain within them. This would lead to more eggs per plant on high density patches - Root (1973) Resource concentration Dilution: Foraging animals may not remain in high density stands, instead moving around at a constant rate irrespective of plant density. This produces more eggs per plant on low density plants or egg “spreading” behaviour - Yamamura (1999) Resource dilution - Ideal free distribution: Complete information / access leads to the eggs being distributed evenly Low Density - High Density Depends on patterns of movement Ideal free distribution 4 School of Biological Sciences, Victoria University, Wellington © Jim Barritt 2006
Theory - Resource concentration ? • Is there a relationship between eggs per plant and plant density ? - - Concentration: Higher plant density should provide more information (e. g. olfactory cues) so animals are expected to locate dense patches easily and remain within them. This would lead to more eggs per plant on high density patches - Root (1973) Resource concentration Dilution: Foraging animals may not remain in high density stands, instead moving around at a constant rate irrespective of plant density. This produces more eggs per plant on low density plants or egg “spreading” behaviour - Yamamura (1999) Resource dilution - Ideal free distribution: Complete information / access leads to the eggs being distributed evenly Low Density - High Density Depends on patterns of movement Ideal free distribution 5 School of Biological Sciences, Victoria University, Wellington © Jim Barritt 2006
Theory - Resource dilution ? • Is there a relationship between eggs per plant and plant density ? - - Concentration: Higher plant density should provide more information (e. g. olfactory cues) so animals are expected to locate dense patches easily and remain within them. This would lead to more eggs per plant on high density patches - Root (1973) Dilution: Foraging animals may not remain in high density stands, instead moving around at a constant rate irrespective of plant density. This produces more eggs per plant on low density plants or egg “spreading” behaviour - Yamamura (1999) - free distribution: Complete information / access leads to the eggs being distributed evenly - Depends on patterns of movement Ideal Low Density Resource concentration Resource dilution High Density Ideal free distribution 6 School of Biological Sciences, Victoria University, Wellington © Jim Barritt 2006
Theory - Ideal free distribution ? • Is there a relationship between eggs per plant and plant density ? - - • Concentration: Higher plant density should provide more information (e. g. olfactory cues) so animals are expected to locate dense patches easily and remain within them. This would lead to more eggs per plant on high density patches - Root (1973) Dilution: Foraging animals may not remain in high density stands, instead moving around at a constant rate irrespective of plant density. This produces more eggs per plant on low density plants or egg “spreading” behaviour - Yamamura (1999) Resource concentration Resource dilution Ideal free distribution: Complete information / access leads to the eggs being distributed evenly It depends on patterns of movement Ideal free distribution 7 School of Biological Sciences, Victoria University, Wellington © Jim Barritt 2006
Simulation • Two seasons of field observations (Marc Hasenbank) • How do patterns of movement create the observed response ? - Published simulations: Jones (1977), Cain (1985), Byers (2001) Random vs force of attraction (incorporate perceptual information? ) • How do we simulate ? - 8 Quantify movement paths Create conceptual model - what is a random walk ? Run simulation experiment! School of Biological Sciences, Victoria University, Wellington © Jim Barritt 2006
Quantifying movement paths Animal moves continuously in space Start 9 School of Biological Sciences, Victoria University, Wellington © Jim Barritt 2006
Quantifying movement paths 7 5 6 8 4 3 2 1 Sample location in space over time Start 10 School of Biological Sciences, Victoria University, Wellington © Jim Barritt 2006
Quantifying movement paths Join the dots to create “Steps” - an abstraction of the real path Start 11 School of Biological Sciences, Victoria University, Wellington © Jim Barritt 2006
Quantifying movement paths Measurements Start 12 School of Biological Sciences, Victoria University, Wellington © Jim Barritt 2006
Random walks - Step 1 • We can simulate the path: - Choose θ (angle of turn) at random (+/- 180°) - Move 1 step length in that direction. . . 0° -90° +/-180° 13 School of Biological Sciences, Victoria University, Wellington © Jim Barritt 2006
Random walks - Step 2 • We can simulate the path: - Choose θ (angle of turn) at random (+/- 180°) - Move 1 step length in that direction - Repeat 0° -90 ° +/-1 80° 14 School of Biological Sciences, Victoria University, Wellington © Jim Barritt 2006
Random walks - Step 3 • We can simulate the path: - Choose an heading at random (+/- 180°) - Move 1 step length in that direction - Repeat ° -90 0° +/18 0° ° +9 0 15 School of Biological Sciences, Victoria University, Wellington © Jim Barritt 2006
Random walks - Step 10 • This is a “Random Walk” (or flight!) - It does not imply that the animal is behaving randomly but that there is a random element involved in the interaction with the environment - Root & Kareiva (1984) Start 16 School of Biological Sciences, Victoria University, Wellington © Jim Barritt 2006
Random walks - correlated steps • Some animals may exhibit “pure” random walks - e. g. Whirligig Beetles (Gyrinus sp. ) • Butterflies have a “direction of travel” and so are more likely to turn with θ around 0° 0° -90° +/-180° • “Correlated” 17 School of Biological Sciences, Victoria University, Wellington http: //insects. tamu. edu © Jim Barritt 2006
Random walks - correlated steps • We can simulate correlation of angle of turn by selecting θ from a probability distribution. . . 0° -90° +/-180° Cain (1985) - demonstrated similar distribution for observed Pieris angles of turn 18 School of Biological Sciences, Victoria University, Wellington © Jim Barritt 2006
Random walks - Correlated steps • After 10 steps. . . Start 19 School of Biological Sciences, Victoria University, Wellington © Jim Barritt 2006
Correlated random walk • More “directional” than “pure” random walk Start 20 School of Biological Sciences, Victoria University, Wellington © Jim Barritt 2006
From theory to simulation • Take the standard deviation (s. d. ) of the probability distribution and the step length. . . 0° -90° +/180° 21 School of Biological Sciences, Victoria University, Wellington © Jim Barritt 2006
From theory to simulation • Provides two simulation parameters, L and A 0° -90° +90° A +/180° L 22 School of Biological Sciences, Victoria University, Wellington © Jim Barritt 2006
Simulation • Visual demonstration with simple cabbage layout • Experiment Parameters • Results 23 School of Biological Sciences, Victoria University, Wellington © Jim Barritt 2006
Visual demonstration - Step 0 L=10 A=20 Butterfly Cabbage Release boundary 24 School of Biological Sciences, Victoria University, Wellington © Jim Barritt 2006
Visual demonstration - Step 1 L=10 A=20 When move outside “world”, removed 25 School of Biological Sciences, Victoria University, Wellington © Jim Barritt 2006
Visual demonstration - Step 2 L=10 A=20 26 School of Biological Sciences, Victoria University, Wellington © Jim Barritt 2006
Visual demonstration - Step 3 L=10 A=20 27 School of Biological Sciences, Victoria University, Wellington © Jim Barritt 2006
Visual demonstration - Step 4 L=10 A=20 28 School of Biological Sciences, Victoria University, Wellington © Jim Barritt 2006
Visual demonstration - Step 6 L=10 A=20 29 School of Biological Sciences, Victoria University, Wellington © Jim Barritt 2006
Visual demonstration - Step 8 L=10 A=20 30 School of Biological Sciences, Victoria University, Wellington © Jim Barritt 2006
Visual demonstration - Step 10 L=10 A=20 31 School of Biological Sciences, Victoria University, Wellington © Jim Barritt 2006
Visual demonstration - Step 11 L=10 A=20 When intersect a cabbage, lay egg and “die” 32 School of Biological Sciences, Victoria University, Wellington © Jim Barritt 2006
Visual demonstration - Step 12 (End) L=10 A=20 33 School of Biological Sciences, Victoria University, Wellington © Jim Barritt 2006
Experiment Parameters • L = step length (0. 5 m to 2 m) • A = s. d angle of turn (20° to 100°) • Cabbage radius = 20 cm, spacing = 25 cm • Large L / Small A = more directional • Small L / Large A = more “wiggle” Directional “Wiggle” • 12, 000 butterflies • 10 replicates 34 School of Biological Sciences, Victoria University, Wellington © Jim Barritt 2006
Experimental Cabbage layout 35 School of Biological Sciences, Victoria University, Wellington © Jim Barritt 2006
Results Simulation 36 School of Biological Sciences, Victoria University, Wellington © Jim Barritt 2006
Results Simulation vs Field 37 School of Biological Sciences, Victoria University, Wellington © Jim Barritt 2006
Results Simulation vs Field 38 School of Biological Sciences, Victoria University, Wellington © Jim Barritt 2006
Results Log Linear Regression Field Resource concentration Simulation Ideal free distribution ✔ Resource dilution H 0 - β=0 Field p-value = 0. 037 Simulation p-value = 0. 0425 r 2 (Field+Simulation) = 0. 9 Ideal free distribution 39 School of Biological Sciences, Victoria University, Wellington © Jim Barritt 2006
Results Log Linear Regression Field Consistent with literature (Yamamura, 1999) Resource concentration Simulation Ideal free distribution ✔ Resource dilution H 0 - β=0 Field p-value = 0. 037 Simulation p-value = 0. 0425 r 2 (Field+Simulation) = 0. 9 40 School of Biological Sciences, Victoria University, Wellington © Jim Barritt 2006
Results - varying parameters L=50 L=100 L=150 L=200 Eggs Per Plant (mean +/stderr) A=20 A=60 A=100 Plant Density 41 School of Biological Sciences, Victoria University, Wellington © Jim Barritt 2006
Results - varying parameters L=50 L=100 L=150 L=200 Eggs Per Plant (mean +/stderr) A=20 A=60 L=200 A=100 Plant Density 42 School of Biological Sciences, Victoria University, Wellington © Jim Barritt 2006
Conclusions • With a simple correlated random walk we can predict egg distributions for Pieris - No attractive force ✔ ✔ • With no attractive force we observe resource dilution • Attractive force could potentially produce resource concentration. . . 43 School of Biological Sciences, Victoria University, Wellington ? © Jim Barritt 2006
Conclusions • With a simple correlated random walk we can predict egg distributions for Pieris - No attractive force ✔ ✔ • With no attractive force we observe resource dilution • Attractive force could potentially produce resource concentration. . . 44 School of Biological Sciences, Victoria University, Wellington ? © Jim Barritt 2006
Conclusions • With a simple correlated random walk we can predict egg distributions for Pieris - No attractive force ✔ ✔ • With no attractive force we observe resource dilution • Attractive force could potentially produce resource concentration. . . 45 School of Biological Sciences, Victoria University, Wellington ? © Jim Barritt 2006
Future Work • Deterministic attraction - Force of attraction (similar to gravity) Perceptual ranges Information gradients / matrix • Random walk influenced by Environment - Move length and Angle of turn as functions of information • Lifecycle: multiple eggs, migration vs birth • Multi-species - Co-existance by having different movement patterns? • Fractal (Levy) Walks and landscape 46 School of Biological Sciences, Victoria University, Wellington © Jim Barritt 2006
Acknowledgements • Thanks to - Dr Stephen Hartley Dr Marcus Frean Marc Hasenbank Victoria University Bug Group - Special thanks to John Clark and the staff of Woodhaven Farm (Levin) - Funded by a Royal Society Marsden grant http: //www. oulu. fi/ 47 School of Biological Sciences, Victoria University, Wellington © Jim Barritt 2006
Questions ? • With a simple correlated random walk we can predict egg distributions for Pieris ✔ ✔ • With no attractive force we observe resource dilution • Attractive force could potentially produce resource concentration. . . 48 School of Biological Sciences, Victoria University, Wellington ? © Jim Barritt 2006
References Aldrich, J. (1997). R. A. Fisher and the making of maximum likelihood 1912 -1922. Statistical Science 12, pp. 162 -176. Bukovinszky, T. , R. P. J. Potting, Y. Clough, J. C. van Lenteren, and L. E. M. Vet. (2005). The role of pre- and post-alighting detection mechanisms in the responses to patch size by specialist herbivores. Oikos 109, pp. 435 -446. Byers, J. A. (2001). Correlated random walk equations of animal dispersal resolved by simulation. Ecology 82, pp. 1680 -1690. Cain, M. L. (1985). Random Search by Herbivorous Insects: A Simulation Model. Ecology 66, pp. 876 -888. Finch, S. , and R. H. Collier. (2000). Host-plant selection by insects - a theory based on 'appropriate/inappropriate landings' by pest insects of cruciferous plants. Entomologia Experimentalis Et Applicata 96, pp. 91 -102. Fretwell, S. D. , and H. L. Lucas. (1970). On territorial behaviour and other factors influencing habitat distribution in birds. Acta Biotheoretica 19, pp. 16 -36. Grez, A. A. , and R. H. Gonzalez. (1995). Resource Concentration Hypothesis - Effect of Host-Plant Patch Size on Density of Herbivorous Insects. Oecologia 103, pp. 471 -474. Holmgren, N. M. A. , and W. M. WGetz. (2000). Evolution of host plant selection in insect under perceptual constraints: A simulation study. Evolutionary Ecology Research 2, pp. 81 -106. Jones, R. E. (1977). Movement Patterns and Egg Distribution in Cabbage Butterflies. The Journal of Animal Ecology 46, pp. 195 -212. Olden, J. D. , R. L. Schooley, J. B. Monroe, and N. L. Poff. ( 2004). Context-dependent perceptual ranges and their relevance to animal movements in landscapes. Journal of Animal Ecology 73, pp. 1190 -1194. Otway, S. J. , A. Hector, and J. H. Lawton. (2005). Resource dilution effects on specialist insect herbivores in a grassland biodivers ity experiment. Journal of Animal Ecology 74, pp. 234 -240. Root, R. B. (1973). Organization of a Plant-Arthropod Association in Simple and Diverse Habitats: The Fauna of Collards ( Brassica Oleracea). Ecological Monographs 43, pp. 95 -124. Root, R. B. , and P. M. Kareiva. (1984). The search for resources by cabbage butterflies (Pieris rapae): ecological consequences and adaptive significance of markovian movements in a patchy environment. Ecology 65: 147 -165. Tilman, D. , and P. M. Kareiva. (1997). Spatial Ecology: The Role of Space in Population Dynamics and Interspecific Interactions. Monographs In Population Biology 30 Yamamura, K. 1999. Relation between plant density and arthropod density in cabbage. Researches on Population Ecology 41: 177182. 49 School of Biological Sciences, Victoria University, Wellington © Jim Barritt 2006
Mean Squared Displacement 50 School of Biological Sciences, Victoria University, Wellington © Jim Barritt 2006
Why simulate ? • Wide range of existing research modelling behaviour of Pieris rapae - Jones (1970), Cain (1985), Byers(2001) Are these a good fit to our field observations? Validation of current theory • Provide a conceptual model to aid interpretation of field data - Use simple model and compare to field data Reveal intrinsic patterns • Assess potential behaviour mechanisms affecting egg distribution - 51 How do the butterflies move ? School of Biological Sciences, Victoria University, Wellington © Jim Barritt 2006
Logr regression details 52 School of Biological Sciences, Victoria University, Wellington © Jim Barritt 2006
Published Parameters • Published data: -Byers(2001) - derived from Root & Kareiva (1984) -A ≈ 50 degrees -L ≈ 2. 5 m 53 School of Biological Sciences, Victoria University, Wellington © Jim Barritt 2006
Statistical tests • H 0 Field egg distribution = Simulation - observed → field, expected → simulation • H 0 Field regression slope (β) = Simulation 54 School of Biological Sciences, Victoria University, Wellington © Jim Barritt 2006
Statistical tests • H 0 Field egg distribution = Simulation - observed → field, expected → simulation X 2 H 0 - observed = expected : p<0. 001 (3 e-11) ∴ significant difference • H 0 Field regression slope (β) = Simulation - ✘ ✔ t-test H 0 - β simulation = β field : p=0. 839 ∴ no significant difference • All results show resource dilution - 55 Negative β p<0. 05 that β = 0 (Ideal free distribution) School of Biological Sciences, Victoria University, Wellington © Jim Barritt 2006
Conclusions • Simulation reproduces effects observed in the field - Resource dilution In both simulation and field results Suggests random walk is good basis for representing Pieris movement Consistent with literature ✔ • But. . . • Does not yet represent field results accurately - 56 Saw change in effect for lower step length Need to explore more parameters Change behaviour algorithm e. g. more than 1 egg Future work. . . School of Biological Sciences, Victoria University, Wellington ✘ © Jim Barritt 2006
Field results • Which do we observe in our field experiments ? Resource concentration Resource dilution Ideal free distribution 57 School of Biological Sciences, Victoria University, Wellington © Jim Barritt 2006
Field results Resource concentration Resource dilution Ideal free distribution 58 School of Biological Sciences, Victoria University, Wellington © Jim Barritt 2006
Field results - log transformation ✘ Field Resource concentration Ideal free distribution ✔ Resource dilution H 0 - β=0 p-value = 0. 037 r 2 = 0. 9 ✘ Ideal free distribution 59 School of Biological Sciences, Victoria University, Wellington © Jim Barritt 2006
Field results - log transformation Field Consistent with literature Ideal free distribution (Yamamura, 1999) ✔ Resource dilution H 0 - β=0 p-value = 0. 037 r 2 = 0. 9 60 School of Biological Sciences, Victoria University, Wellington © Jim Barritt 2006
Theory • Is there a relationship between plant density and eggs per plant ? Low Density 5 plants, density = 0. 05 High Density 20 plants, density = 0. 2 1 plant 61 School of Biological Sciences, Victoria University, Wellington © Jim Barritt 2006
Theory - Response to plant density • Three possible responses Low Density 5 plants, density = 0. 05 ➔ High Density 20 plants, density = 0. 2 1 plant 62 School of Biological Sciences, Victoria University, Wellington © Jim Barritt 2006
Yamamura 1999 Results 63 School of Biological Sciences, Victoria University, Wellington © Jim Barritt 2006
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