PROTEIN SYNTHESIS copyright cmassengale 1 DNA and Genes

PROTEIN SYNTHESIS copyright cmassengale 1

DNA and Genes copyright cmassengale 2

DNA • DNA contains genes, sequences of nucleotide bases • These Genes code for polypeptides (proteins) • Proteins are used to build cells and do much of the work inside cells copyright cmassengale 3

Genes & Proteins § Proteins are made of amino acids linked together by peptide bonds § 20 different amino acids exist copyright cmassengale 4

Amino Acid Structure copyright cmassengale 5

Polypeptides • Amino acid chains are called polypeptides copyright cmassengale 6

DNA Begins the Process • DNA is found inside the nucleus • Proteins, however, are made in the cytoplasm of cells by organelles called ribosomes • Ribosomes may be free in the cytosol or attached to the surface of rough ER copyright cmassengale 7

Starting with DNA • DNA ‘s code must be copied and taken to the cytosol • In the cytoplasm, this code must be read so amino acids can be assembled to make polypeptides (proteins) • This process is called PROTEIN SYNTHESIS copyright cmassengale 8

RNA copyright cmassengale 9

Roles of RNA and DNA • DNA is the MASTER PLAN • RNA is the BLUEPRINT of the Master Plan copyright cmassengale 10

RNA Differs from DNA • RNA has a sugar ribose DNA has a sugar deoxyribose copyright cmassengale 11

Other Differences • • RNA contains the base uracil (U) DNA has thymine (T) RNA molecule is single-stranded DNA is doublestranded copyright cmassengale DNA 12

Structure of RNA copyright cmassengale 13

. Three Types of RNA • Messenger RNA (m. RNA) copies DNA’s code & carries the genetic information to the ribosomes • Ribosomal RNA (r. RNA), along with protein, makes up the ribosomes • Transfer RNA (t. RNA) transfers amino acids to the ribosomes where proteins are synthesized copyright cmassengale 14

Messenger RNA • Long Straight chain of Nucleotides • Made in the Nucleus • Copies DNA & leaves through nuclear pores • Contains the Nitrogen Bases A, G, C, U ( no T ) copyright cmassengale 15

Messenger RNA (m. RNA) • Carries the information for a specific protein • Made up of 500 to 1000 nucleotides long • Sequence of 3 bases called codon • AUG – methionine or start codon • UAA, UAG, or UGA – stop 16 codons copyright cmassengale

Ribosomal RNA (r. RNA) • r. RNA is a single strand 100 to 3000 nucleotides long • Globular in shape • Made inside the nucleus of a cell • Associates with proteins to form ribosomes • Site of protein Synthesis copyright cmassengale 17

Transfer RNA (t. RNA) • Clover-leaf shape • Single stranded molecule with attachment site at one end for an amino acid • Opposite end has three nucleotide bases called the anticodon copyright cmassengale 18

Transfer RNA amino acid attachment site U A C anticodon copyright cmassengale 19

Codons and Anticodons • The 3 bases of an anticodon are complementary to the 3 bases of a codon • Example: Codon ACU Anticodon UGA copyright cmassengale UGA ACU 20

Transcription and Translation copyright cmassengale 21

Pathway to Making a Protein DNA m. RNA t. RNA (ribosomes) Protein copyright cmassengale 22

Protein Synthesis § The production or synthesis of polypeptide chains (proteins) § Two phases: Transcription & Translation § m. RNA must be processed before it leaves the nucleus of eukaryotic cells copyright cmassengale 23

DNA RNA Protein Nuclear membrane DNA Transcription Eukaryotic Cell Pre-m. RNA Processing m. RNA Ribosome Translation Protein copyright cmassengale 24

Transcription • The process of copying the sequence of one strand of DNA, the template strand • m. RNA copies the template strand • Requires the enzyme RNA Polymerase copyright cmassengale 25

Template Strand copyright cmassengale 26

Question: § What would be the complementary RNA strand for the following DNA sequence? DNA 5’-GCGTATG-3’ copyright cmassengale 27

Answer: • DNA 5’-GCGTATG-3’ • RNA 3’-CGCAUAC-5’ copyright cmassengale 28

Transcription • During transcription, RNA polymerase binds to DNA and separates the DNA strands • RNA Polymerase then uses one strand of DNA as a template to assemble nucleotides into RNA copyright cmassengale 29

Transcription • Promoters are regions on DNA that show where RNA Polymerase must bind to begin the Transcription of RNA • Called the TATA box • Specific base sequences act as signals to stop • Called the termination signal copyright cmassengale 30

RNA Polymerase copyright cmassengale 31

RNA Splicing Young overachieving aliens’ eyes are killing medium sized moths with beach balls!

m. RNA Processing • After the DNA is transcribed into RNA, editing must be done to the nucleotide chain to make the RNA functional • Introns, non-functional segments of DNA are snipped out of the chain copyright cmassengale 33

m. RNA Editing • Exons, segments of DNA that code for proteins, are then rejoined by the enzyme ligase • A guanine triphosphate cap is added to the 5” end of the newly copied m. RNA • A poly A tail is added to the 3’ end of the RNA • The newly processed m. RNA can then leave the nucleus copyright cmassengale 34

Result of Transcription CAP New Transcript copyright cmassengale Tail 35

m. RNA Transcript • m. RNA leaves the nucleus through its pores and goes to the ribosomes copyright cmassengale 36

Translation • Translation is the process of decoding the m. RNA into a polypeptide chain • Ribosomes read m. RNA three bases or 1 codon at a time and construct the proteins copyright cmassengale 37

The Genetic Code • A codon designates an amino acid • An amino acid may have more than one codon • There are 20 amino acids, but 64 possible codons • Some codons tell the ribosome to stop translating copyright cmassengale 38

The Genetic Code • Use the code by reading from the center to the outside • Example: AUG codes for Methionine copyright cmassengale 39

Name the Amino Acids • • • GGG? UCA? CAU? GCA? AAA? copyright cmassengale 40

Remember the Complementary Bases On DNA: A-T C-G On RNA: A-U C-G copyright cmassengale 41

Transcription Translation copyright cmassengale 42

Ribosomes • Made of a large and small subunit • Composed of r. RNA (40%) and proteins (60%) • Have two sites for t. RNA attachment --- P and A copyright cmassengale 43

Step 1 - Initiation • m. RNA transcript start codon AUG attaches to the small ribosomal subunit • Small subunit attaches to large ribosomal subunit m. RNA transcript copyright cmassengale 44

Ribosomes Large subunit P Site A Site m. RNA Small subunit A U G C U A C U U C G copyright cmassengale 45

Step 2 - Elongation • As ribosome moves, two t. RNA with their amino acids move into site A and P of the ribosome • Peptide bonds join the amino acids copyright cmassengale 46

Initiation aa 2 aa 1 2 -t. RNA 1 -t. RNA anticodon hydrogen bonds U A C A U G codon G A U C U A C U U C G A copyright cmassengale m. RNA 47

Elongation peptide bond aa 1 aa 3 aa 2 3 -t. RNA 1 -t. RNA anticodon hydrogen bonds U A C A U G codon 2 -t. RNA G A U C U A C U U C G A copyright cmassengale m. RNA 48

aa 1 peptide bond aa 3 aa 2 1 -t. RNA 3 -t. RNA U A C (leaves) 2 -t. RNA A U G G A A G A U C U A C U U C G A m. RNA copyright cmassengale Ribosomes move over one codon 49

aa 1 peptide bonds aa 2 aa 4 aa 3 4 -t. RNA 2 -t. RNA A U G 3 -t. RNA G C U G A A C U U C G A A C U m. RNA copyright cmassengale 50

aa 1 peptide bonds aa 4 aa 2 aa 3 2 -t. RNA 4 -t. RNA G A U (leaves) 3 -t. RNA A U G G C U G A A C U U C G A A C U m. RNA copyright cmassengale Ribosomes move over one codon 51

aa 1 peptide bonds aa 5 aa 2 aa 3 aa 4 5 -t. RNA U G A 3 -t. RNA 4 -t. RNA G A A G C U A C U U C G A A C U m. RNA copyright cmassengale 52

peptide bonds aa 1 aa 5 aa 2 aa 3 aa 4 5 -t. RNA U G A 3 -t. RNA G A A 4 -t. RNA G C U A C U U C G A A C U m. RNA copyright cmassengale Ribosomes move over one codon 53

aa 4 aa 5 Termination aa 199 aa 3 primary structure aa 2 of a protein aa 200 aa 1 200 -t. RNA A C U terminator or stop codon C A U G U U U A G m. RNA copyright cmassengale 54

End Product –The Protein! • The end products of protein synthesis is a primary structure of a protein • A sequence of amino acid bonded together by peptide bonds aa 2 aa 1 aa 3 aa 4 aa 5 aa 199 copyright cmassengale aa 200 55

Messenger RNA (m. RNA) start codon m. RNA A U G G G C U C C A U C G G C A U A A codon 1 protein methionine codon 2 codon 3 glycine serine codon 4 isoleucine codon 5 codon 6 glycine alanine codon 7 stop codon Primary structure of a protein aa 1 aa 2 aa 3 aa 4 cmassengale peptidecopyright bonds aa 5 aa 6 56

copyright cmassengale 57