Chapter 17 From Gene to Protein Power Point

Chapter 17 From Gene to Protein Power. Point® Lecture Presentations for Biology Eighth Edition Neil Campbell and Jane Reece Lectures by Chris Romero, updated by Erin Barley with contributions from Joan Sharp Copyright © 2008 Pearson Education, Inc. , publishing as Pearson Benjamin Cummings

The Products of Gene Expression: A Developing Story • Some proteins aren’t enzymes, so researchers later revised the hypothesis: one gene–one protein • Many proteins are composed of several polypeptides, each of which has its own gene • Therefore, Beadle and Tatum’s hypothesis is now restated as the one gene–one polypeptide hypothesis • Note that it is common to refer to gene products as proteins rather than polypeptides Copyright © 2008 Pearson Education Inc. , publishing as Pearson Benjamin Cummings

Basic Principles of Transcription and Translation • RNA is the intermediate between genes and the proteins for which they code • Transcription is the synthesis of RNA under the direction of DNA • Transcription produces messenger RNA (m. RNA) • Translation is the synthesis of a polypeptide, which occurs under the direction of m. RNA • Ribosomes are the sites of translation Copyright © 2008 Pearson Education Inc. , publishing as Pearson Benjamin Cummings

• A primary transcript is the initial RNA transcript from any gene • The central dogma is the concept that cells are governed by a cellular chain of command: • DNA -(transcribes) RNA –(translates) protein Copyright © 2008 Pearson Education Inc. , publishing as Pearson Benjamin Cummings

Fig. 17 -3 DNA TRANSCRIPTION m. RNA Ribosome TRANSLATION Polypeptide (a) Bacterial cell Nuclear envelope DNA TRANSCRIPTION Pre-m. RNA PROCESSING m. RNA TRANSLATION Ribosome Polypeptide (b) Eukaryotic cell

Fig. 17 -3 b-1 Nuclear envelope TRANSCRIPTION DNA Pre-m. RNA (b) Eukaryotic cell

Fig. 17 -3 b-2 Nuclear envelope TRANSCRIPTION RNA PROCESSING m. RNA (b) Eukaryotic cell DNA Pre-m. RNA

Fig. 17 -3 b-3 Nuclear envelope DNA TRANSCRIPTION Pre-m. RNA PROCESSING m. RNA TRANSLATION Ribosome Polypeptide (b) Eukaryotic cell

• Codons along an m. RNA molecule are read by translation machinery in the 5 to 3 direction • Each codon specifies the addition of one of 20 amino acids Copyright © 2008 Pearson Education Inc. , publishing as Pearson Benjamin Cummings

Fig. 17 -4 DNA molecule Gene 2 Gene 1 Gene 3 DNA template strand TRANSCRIPTION m. RNA Codon TRANSLATION Protein Amino acid

Cracking the Code • All 64 codons were deciphered by the mid 1960 s • Of the 64 triplets, 61 code for amino acids; 3 triplets are “stop” signals to end translation • The genetic code is redundant but not ambiguous; no codon specifies more than one amino acid • Codons must be read in the correct reading frame (correct groupings) in order for the specified polypeptide to be produced Copyright © 2008 Pearson Education Inc. , publishing as Pearson Benjamin Cummings

Third m. RNA base (3 end of codon) First m. RNA base (5 end of codon) Fig. 17 -5 Second m. RNA base

Evolution of the Genetic Code • The genetic code is nearly universal, shared by the simplest bacteria to the most complex animals • Genes can be transcribed and translated after being transplanted from one species to another Copyright © 2008 Pearson Education Inc. , publishing as Pearson Benjamin Cummings

Fig. 17 -6 (a) Tobacco plant expressing a firefly gene (b) Pig expressing a jellyfish gene

Fig. 17 -7 Promoter Transcription unit 5 3 Start point RNA polymerase 3 5 DNA 1 Initiation 5 3 3 5 Unwound DNA RNA transcript 3 Rewound DNA 3 end 3 5 5 5 3 Termination 3 5 5 3 5 RNA nucleotides 5 3 RNA transcript RNA polymerase Template strand of DNA 2 Elongation 5 3 Nontemplate strand of DNA Elongation Completed RNA transcript 3 Direction of transcription (“downstream”) Newly made RNA Template strand of DNA

Synthesis of an RNA Transcript • The three stages of transcription: – Initiation – Elongation – Termination Copyright © 2008 Pearson Education Inc. , publishing as Pearson Benjamin Cummings

Split Genes and RNA Splicing • Most eukaryotic genes and their RNA transcripts have long noncoding stretches of nucleotides that lie between coding regions • These noncoding regions are called intervening sequences, or introns • The other regions are called exons because they are eventually expressed, usually translated into amino acid sequences • RNA splicing removes introns and joins exons, creating an m. RNA molecule with a continuous coding sequence Copyright © 2008 Pearson Education Inc. , publishing as Pearson Benjamin Cummings

Fig. 17 -10 5 Exon Intron 3 Pre-m. RNA 5 Cap Poly-A tail 1 30 31 Coding segment m. RNA 5 Cap 1 5 UTR 104 105 146 Introns cut out and exons spliced together Poly-A tail 146 3 UTR

• Three properties of RNA enable it to function as an enzyme – It can form a three-dimensional structure because of its ability to base pair with itself – Some bases in RNA contain functional groups – RNA may hydrogen-bond with other nucleic acid molecules Copyright © 2008 Pearson Education Inc. , publishing as Pearson Benjamin Cummings

Fig. 17 -12 Gene DNA Exon 1 Intron Exon 2 Intron Exon 3 Transcription RNA processing Translation Domain 3 Domain 2 Domain 1 Polypeptide

Fig. 17 -13 Amino acids Polypeptide Tr p Ribosome t. RNA with amino acid attached Phe Gly t. RNA Anticodon Codons 5 m. RNA 3

Fig. 17 -14 3 Amino acid attachment site 5 Hydrogen bonds Anticodon (a) Two-dimensional structure 5 3 Amino acid attachment site Hydrogen bonds Anticodon (b) Three-dimensional structure 3 5 Anticodon (c) Symbol used in this book

Fig. 17 -16 a Growing polypeptide t. RNA molecules Exit tunnel Large subunit E PA Small subunit 5 m. RNA 3 (a) Computer model of functioning ribosome

Fig. 17 -16 b P site (Peptidyl-t. RNA binding site) E site (Exit site) A site (Aminoacylt. RNA binding site) E P A m. RNA binding site Large subunit Small subunit (b) Schematic model showing binding sites Growing polypeptide Amino end Next amino acid to be added to polypeptide chain m. RNA 5 E t. RNA 3 Codons (c) Schematic model with m. RNA and t. RNA

Building a Polypeptide • The three stages of translation: – Initiation – Elongation – Termination • All three stages require protein “factors” that aid in the translation process Copyright © 2008 Pearson Education Inc. , publishing as Pearson Benjamin Cummings

Ribosome Association and Initiation of Translation • The initiation stage of translation brings together m. RNA, a t. RNA with the first amino acid, and the two ribosomal subunits • First, a small ribosomal subunit binds with m. RNA and a special initiator t. RNA • Then the small subunit moves along the m. RNA until it reaches the start codon (AUG) • Proteins called initiation factors bring in the large subunit that completes the translation initiation complex Copyright © 2008 Pearson Education Inc. , publishing as Pearson Benjamin Cummings

Concept 17. 5: Point mutations can affect protein structure and function • Mutations are changes in the genetic material of a cell or virus • Point mutations are chemical changes in just one base pair of a gene • The change of a single nucleotide in a DNA template strand can lead to the production of an abnormal protein Copyright © 2008 Pearson Education Inc. , publishing as Pearson Benjamin Cummings

Fig. 17 -22 Wild-type hemoglobin DNA Mutant hemoglobin DNA C T T C A T 3 5 G T A G A A 3 5 m. RNA 5 G A A Normal hemoglobin Glu m. RNA 3 5 G U A Sickle-cell hemoglobin Val 5 3 3

Types of Point Mutations • Point mutations within a gene can be divided into two general categories – Base-pair substitutions – Base-pair insertions or deletions Copyright © 2008 Pearson Education Inc. , publishing as Pearson Benjamin Cummings

Fig. 17 -23 Wild-type DNA template strand 3 5 5 3 m. RNA 5 3 Protein Stop Amino end Carboxyl end A instead of G 3 5 Extra A 5 3 3 5 3 5 U instead of C 5 5 3 Extra U 3 Stop Silent (no effect on amino acid sequence) Frameshift causing immediate nonsense (1 base-pair insertion) T instead of C missing 3 5 5 3 3 5 3 5 5 3 A instead of G missing 5 3 Stop Missense Frameshift causing extensive missense (1 base-pair deletion) missing A instead of T 5 3 3 5 U instead of A 5 5 3 3 5 missing 3 5 Stop Nonsense (a) Base-pair substitution 3 No frameshift, but one amino acid missing (3 base-pair deletion) (b) Base-pair insertion or deletion

Mutagens • Spontaneous mutations can occur during DNA replication, recombination, or repair • Mutagens are physical or chemical agents that can cause mutations Copyright © 2008 Pearson Education Inc. , publishing as Pearson Benjamin Cummings