WSSP Chapter 12 Conserved Domain Database and Cn

WSSP Chapter 12 Conserved Domain Database and Cn 3 D atttaccgtg tgatgagtat ccggaaatag acttcaatga ttgattaata ttggattgaa gatacagttt gatcccgatc ttggttctaa tttccatttc attatcttgc tccgtattaa atgattgctt gcattcgaat tgtcccagtt atgagccagc taacgg caatattttc gcgtacccgt tttaattttc

Protein Structure Analysis Questions in DSAP (Q 3 -Q 5) © 2014 WSSP

BLASTP search with EX 1. 14 © 2014 WSSP p. 12 -2

Conserved domains in proteins © 2014 WSSP p. 12 -2

Conserved Domain Database (CDD) report © 2014 WSSP p. 12 -3

Dynein light chain domain families With structure Without structure © 2014 WSSP

Dynein light chain domain family (with structure) © 2014 WSSP p. 12 -3

Links to structure files © 2014 WSSP p. 12 -3

Cn 3 D of 1 YO 3 R_C structure Graphic window Alignment window © 2014 WSSP Annotation window p. 12 -4

Highlight residues in the protein © 2014 WSSP p. 12 -4

Worm view of alpha helices and beta strands © 2014 WSSP P. 12 -5

Spacefill of residues. © 2014 WSSP p. 12 -6

Space view of another protein in CPK coloring © 2014 WSSP (Not in text)

Annotations © 2014 WSSP p. 12 -6

View multiple proteins in a complex © 2014 WSSP p. 12 -7

Enter in findings into DSAP Analysis page © 2014 WSSP

Finding the information for DSAP © 2014 WSSP

Use the secondary structure view of the protein to count helices and strands © 2014 WSSP