validated proteins non validated proteins Abbased MSbased All

validated proteins non validated proteins Ab-based MS-based All techniques protein-coding ne. Xt. Prot awaiting chromosome genes entries (sep HPA (high or validation ne. Xt. Prot protein ne. Xt. Prot uncertain Peptide. Atlas GPMdb green (aug (Ensembl v 72) 2013) (PE 5) (sep 2013) ("missings") (PE 2 -4) medium) (dec level (PE 1) (sep (aug 2013) (sep 2013) 2012) 2013) 1 2059 2061 1'053 1415 1521 1600 49 412 2 1240 1239 726 909 962 1029 20 190 3 1071 1076 641 764 818 877 20 179 4 769 763 450 529 566 613 20 130 5 862 867 534 624 668 696 11 160 6 1094 1108 560 795 784 902 30 176 7 938 944 471 660 680 706 52 186 8 709 701 323 472 500 554 39 108 9 821 397 544 567 616 43 162 10 762 763 478 528 574 592 19 152 11 1314 1321 654 791 845 926 41 354 12 1026 1030 577 730 787 842 19 169 13 328 187 236 251 266 10 52 14 625 626 375 445 472 503 18 105 15 614 609 328 427 456 457 41 111 16 839 831 444 614 671 660 32 139 17 1167 555 847 907 951 25 191 18 276 278 132 195 219 227 7 44 19 1414 1424 721 1028 1076 1018 37 369 20 547 552 291 384 398 442 14 96 21 254 113 142 148 167 28 59 22 458 464 274 337 339 356 21 87 X 866 827 479 554 626 613 32 182 Y 56 47 26 30 22 21 8 18 MT 14 14 5 12 12 13 1 0 All 20123 20115 10794 14012 14869 15647 637 3831 "unmapped" 25 7 1 17 "shared" 12 8 0 4 Total 20123 20128 10794 14012 14869 15646 638 3844 Added from Oct 0 2012 64 1503 569 1982 *The sum of ne. Xt. Prot entries aggregated over the 24 chromosomes and the mitochondria (20115) does not correspond to the total number of ne. Xt. Prot entries (20128) because of two reasons: 25 ne. Xt. Prot entries are not confidently mappable to any chromosome (including 7 PE 1 and 1 PE 5 proteins) and 7 entries are shared between more than 1 chromosome (representing 12 extra counts, among which 8 are for PE 1 proteins). The 2 "shared" missing proteins are : NX_Q 6 IEY 1 (OR 4 F 16; OR 4 F 29; OR 4 F 3) between chr 1 and 5 and NX_Q 6 VEP 3 (FAM 138 A; FAM 138 B; FAM 138 C; FAM 138 F) between chromosomes 1, 2, 9 and 19.