Use SIOC RDF format for representation of scientific

Identify key assertions in publications and database entries „. . . Substance A interacts

Substance A Interacts with Receptor B gion C onal projections ain region D ersive

What the machine sees. . . <http: //hcls. deri. org/atag-data/pastebin. html#49 ddfee 65 f

Datasource Description Source of entities used for tagg SIDER Drug side-effect data. Size: 100,

What could this add to VIVO? Light-weight representation of scientific statements, interlinked with information

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Use SIOC RDF format for representation of scientific statements Annotated statements created by manual curation automated extraction of biomedical literature conversion of structured databases Scientific statements are annotated with Linked Data entities Represent scientific assertions and data with the ease of blogging and tagging

Identify key assertions in publications and database entries „. . . Substance A interacts with receptor B in region C of the brain. . . “ „. . . Region C has strong axonal projections into region D. . . “ „. . . Region D is implicated in the processing of aversive stimuli. . . “

Substance A Interacts with Receptor B gion C onal projections ain region D ersive stimuli Interlink these entities with taxonomies & ontologies

contains RDFa

What the machine sees. . . <http: //hcls. deri. org/atag-data/pastebin. html#49 ddfee 65 f 7 f 4> a sioc: Item ; sioc: content "Huperzine A acts as a non-competitive antagonist of the NMDA receptors"@en ; sioc: topic <http: //dbpedia. org/resource/Huperzine_A> , <http: //purl. org/obo/owl/GO#GO_0048019> , <http: //dbpedia. org/resource/NMDA_receptor> ; rdfs: see. Also <http: //www. ncbi. nlm. nih. gov/pubmed/11516831>.

database converted to a. Tags

a. Tags generated by NLP web service

Datasource Description Source of entities used for tagg SIDER Drug side-effect data. Size: 100, 000 RDF statements. DBpedia, Ch. EBI PDSP Ki Database Receptor-ligand interactions quantified by Ki. Sense. Lab, value, emphasis Ch. EBI on data about Pub. Med Conclusion sections extracted from Pub. Med. SKOS abstracts, version annotated of Medical with. Subject Medic Science Commons Text Webservice Annotation that. Service annotates sentences in Pub. Med Gene Ontology, abstracts with Ch. EBI, a. Tags some sm a. Tag Pastebin User-generated content, mostly curated from DBpedia scientific texts on the web, crea

12 a. Tag Explorer

What could this add to VIVO? Light-weight representation of scientific statements, interlinked with information about persons and institutions 13

http: //hcls. deri. org/atag/