USDAARS www rosaceae org Resources for Rosaceae Research

  • Slides: 2
Download presentation
USDA-ARS www. rosaceae. org Resources for Rosaceae Research Discovery and Crop Improvement 3 4

USDA-ARS www. rosaceae. org Resources for Rosaceae Research Discovery and Crop Improvement 3 4 2 6 11 Genomes 5 110 166 15 1, 491 1, 528 13 8, 743 71, 716 15 9 Pyrus 1, 593 471, 854 171 108 489 Washington State University, Clemson University and US Land Grant Universities QTLs Washington Tree Fruit Research Commission 27 NSF PGRP Award # 444573 127, 877 USDA NIFA SCRI Award # 2014 -51181 -2237 Markers USDA National Research Support Project (NRSP 10) Fragaria Supported by: Species @GDR_news Maps For more information contact: Dorrie Main (dorrie@wsu. edu) Sook Jung (sook_jung@wsu. edu) 2, 613, 842 • Rosa Rubus • Prunus • Malus • Available Data • GDR Features: Map. Viewer for interactive map viewing Searchable marker, trait, genotype gene, germplasm databases Assembled annotated reference transcriptome (Ref. Trans) searchable by BLAST Synteny viewer to view syntenic regions among all available species Pathway. Cyc of apple, peach, Rubus, and Fragaria genomes

Breeding Information Management System for public/private breeding data GDR also has: • BLAST tool

Breeding Information Management System for public/private breeding data GDR also has: • BLAST tool to search genomes, unigenes, and reference transcriptomes • JBrowse tools to view genome annotations including SNP variation Synteny viewer for viewing syntenic regions among all available species Map. Viewer for dynamic visualization of genetic maps • Search interfaces for finding marker, map, QTL, genotype, phenotype, and sequence data Home page allows for quick access to species specific data and popular tools Genotype search/download tool