Solexa tag analysis 0620 ahsan Tag to Gene
- Slides: 12
Solexa tag analysis 0620 ahsan
Tag to Gene Relation
Keyword 検索 Flybase. Tr. ID Gene. Name Keyword: 遺伝子名前を記入する Keykinds: gene. Name を選択する FBtr 0083733 sqz. RA FBtr 0084012 ppan -RA FBtr 0078728 Xe 7 RA FBtr 0078729 Xe 7 RB URL: http: //dev. utgenome. org/~utgb/drosophila/genome_browser/browser. php FBtr 0081642 Aly. RA
Core promoter Structure DRE TATA DNA TATA Box Replication Element Binding Factor Initiator DPE MTE Downstream Motif Ten Promoter Element Image 1 : Core promoter. Transcription Start Site (TSS) position is 0, where TATA at -30 to -25 , DPE at +29 to +33, MTE at downstream. DRE position is not restricted by upstream of TSS.
motif element in Drosophila Chromosome and Rep. TSS core promoter Motif Chromosomal Core promoter DRE 23, 792 527 TATA 31, 629 715 INR 52, 111 371 DPE 29, 781 455 MTE 45, 196 547
TATA motif position in Res. TSS core promoter
B INR motif position in Res. TSS core promoter
C DPE motif position in Res. TSS core promoter
D MTE motif position in Res. TSS core promoter
co-existence of binding motif in core promoter region (TATA, INR, DPE, MTE) Rep. TSS # 0000 18, 600 0001 505 0010 403 0100 320 1000 652 1100 22 1010 21 1001 18 0110 18 0101 10 0011 12 0111 0 1011 1 1110 0 1101 1 1111 0 Here 0, 1 express, the present and absent of each motif elements in written order
TSS distance Annotation TSS から代表TSSの距離 Annotation TSS からClusterの開始点の距離
