Separation techniques Centrifugation DIFFERENTIAL CENTRIFUGATION DENSITY GRADIENT CENTRIFUGATION

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Separation techniques

Separation techniques

Centrifugation • DIFFERENTIAL CENTRIFUGATION • DENSITY GRADIENT CENTRIFUGATION

Centrifugation • DIFFERENTIAL CENTRIFUGATION • DENSITY GRADIENT CENTRIFUGATION

DIFFERENTIAL CENTRIFUGATION

DIFFERENTIAL CENTRIFUGATION

DENSITY GRADIENT CENTRIFUGATION

DENSITY GRADIENT CENTRIFUGATION

Meselson-Stahl Experiment

Meselson-Stahl Experiment

Gel Electrophoresis

Gel Electrophoresis

Definition • Electro = Charge + Phorsesis= Carry • Electrophoresis = Separation of charged

Definition • Electro = Charge + Phorsesis= Carry • Electrophoresis = Separation of charged molecules by differences in their rate of migration in an electric field.

The Components of The System • Molecules to be separated • Proteins • Nucleic

The Components of The System • Molecules to be separated • Proteins • Nucleic Acids • Support medium • Gel (Starch, Polyacrylamide or Agarose) • Buffer System • DC Power Source

Common Support Media for Biological Molecules • Proteins • Native Gel (Acrylamide or Starch)

Common Support Media for Biological Molecules • Proteins • Native Gel (Acrylamide or Starch) • Denaturing (SDS) Gel (Acrylamide) • Nucleic Acids – DNA & RNA • Agarose Gel • Acrylamide Gel

Factors that Influence Mobility • Properties of the Molecules to be separated • Molecular

Factors that Influence Mobility • Properties of the Molecules to be separated • Molecular size (MW) • Molecular shape • Molecular charge • Properties of the System • Electric field strength (V/cm) • Porosity of the support medium (% S) • Conductivity of the buffer (R)

These Factors Interact • Mobility is proportional to charge/MW. • Mobility is proportional to

These Factors Interact • Mobility is proportional to charge/MW. • Mobility is proportional to field strength.

SDS Polyacrylamide Gel Electrophoresis (SDS PAGE)

SDS Polyacrylamide Gel Electrophoresis (SDS PAGE)

Separation of DNA Molecules in Agarose Gels • The phosphate groups bear negative charge

Separation of DNA Molecules in Agarose Gels • The phosphate groups bear negative charge at neutral p. H (2 phosphates/BP) • Therefore mobility will be based on number of base pairs/molecule