Second Structure Prediction by Exon Boundaries in m

Second Structure Prediction by Exon Boundaries in m. RNA Dr. Chen Keasar Yael Mathov

Biology for Programmers

Project Goals

Sniffer 1 3 clicks

Sniffer 2

Sniffer 2 Inspected the structures & elements in the source code. Learned HTMLCSS and Java. Script in order to understand the source code. Searched for hidden elements. Finally I found the “nuccore” index!

Sniffer 2

Protein Data Base

JSON Parser 1

JSON Parser 2 Sniffe r 1

Real, Shuffle, Random Real Shuffle Random

Rang: 0 – 20 (out of 44905 exons) Statistic for 0 is { Real: 35287 } { Shuffle: 34997 } { Random: 35382 } Statistic for 1 is { Real: 36722 } { Shuffle: 36548 } { Random: 36886 } Statistic for 2 is { Real: 39413 } { Shuffle: 39202 } { Random: 39459 } Statistic for 3 is { Real: 41183 } { Shuffle: 40958 } { Random: 41165 } Statistic for 4 is { Real: 42408 } { Shuffle: 42221 } { Random: 42369 } Statistic for 5 is { Real: 43167 } { Shuffle: 43072 } { Random: 43182 } Statistic for 6 is { Real: 43714 } { Shuffle: 43624 } { Random: 43723 } Statistic for 7 is { Real: 44074 } { Shuffle: 44003 } { Random: 44085 } Statistic for 8 is { Real: 44300 } { Shuffle: 44244 } { Random: 44325 } Statistic for 9 is { Real: 44473 } { Shuffle: 44411 } { Random: 44484 } Statistic for 10 is { Real: 44578 } { Shuffle: 44521 } { Random: 44589 } Statistic for 11 is { Real: 44665 } { Shuffle: 44592 } { Random: 44660 } Statistic for 12 is { Real: 44707 } { Shuffle: 44646 } { Random: 44709 } Statistic for 13 is { Real: 44742 } { Shuffle: 44685 } { Random: 44746 } Statistic for 14 is { Real: 44765 } { Shuffle: 44714 } { Random: 44773 } Statistic for 15 is { Real: 44786 } { Shuffle: 44736 } { Random: 44795 } Statistic for 16 is { Real: 44806 } { Shuffle: 44754 } { Random: 44811 } Statistic for 17 is { Real: 44822 } { Shuffle: 44770 } { Random: 44825 } Statistic for 18 is { Real: 44835 } { Shuffle: 44781 } { Random: 44837 } Statistic for 19 is { Real: 44842 } { Shuffle: 44791 } { Random: 44846 } Statistic for 20 is { Real: 44852 } { Shuffle: 44799 } { Random: 44854 } Results

Questions?