Phylgenetic tree 70 identity 85 identity 60 identity
- Slides: 11
Phylgenetic tree
>70 % identity >85% identity ~60% identity
MT-1 ( At 5 g 37990) • 1. Expression profile- roots (R), leaves (L), Se –treated with Na. Cl, 4 o. C, H 2 O stress • 2. Available knock-out mutants–Y/homozygous/intron • 3. Over-expression – Y • 4. Promoter-GUS -Y • *putative signal peptide • mlsaflghasaiaiaspvvsivgirrqtygemkhvgvvekqr
MT-2 ( At 5 g 37970) • 1. Expression profile – roots (R), leaves (L), Se – treated with 4 o. C, H 2 O stress • 2. Knock-out mutants-NO • 3. Over-expression - YES • 4. Promoter-GUS - YES • *putative signal peptide • Mlsafwghasaiaiaspvvsivgfqgdrttirrptygemkfvdvverpr – no predicted cleveage signal
MT-3 ( At 5 g 38780) • 1. Expression profile- R, Leaves, Se. Na. Cl, Se 4 C, Water treated leaves • 2. Available knock-out mutants-Y-homozygous/exon • 3. Over-expression - Y • 4. Promoter-GUS – Y o • *Microarray: detected in senescent leaves /SA, JA mutants/
MT-4 ( At 5 g 38100) • • 1. Expression profile-St, L, F, R, Se-Na. Cl, Se-4 C 2. Available knock-out mutants-? -one putative, 5`UTR 3. Over-expression - Y 4. Promoter-GUS - Y o
MT-9 ( At 5 g 68040) • • 1. Expression profile - R 2. Available knock-out mutants-Y/homozygous/exon 3. Over-expression - Y 4. Promoter-GUS - Y
MT-12 ( At 5 g 56300) • 1. Expression profile-developing seeds, F, R, L, Se-Na. Cl, Se-4 C • 2. Available knock-out mutants -Y/heterozygous • 3. Over-expression - Y • 4. Promoter-GUS - Y o
MT-13 ( At 5 g 26420) • • 1. Expression profile-exclusively in developing seeds 2. Available knock-out mutants-? two putative mutants 3. Over-expression - Y 4. Promoter-GUS -Y
Developing siliques Flower MT-4 MT-12 Back to the first MT-1, MT-2 MT-3 MT-4 MT-12 Se LEAVES MT-4 MT-12 MT-9? MT-3? Roots MT-1, 2, 3, 4, 9, 12 MT-13
MT-No Knock-out mutants Over. Promoterexpression GUS Protein exprerssion vector MT-1 YES (intron) üY üY üp. H 9/ Topo MT-2 N/A üY üY üp. His 9/ Topo MT-3 YES (exon) üY üY üp. His 9/ Topo +5 UTRSalk_148019) MT-4 ? 5`UTR Salk_007118 In progress üY üp. His 9/ Topo MT-9 YES (exon) In progress üY üp. His 9/ Topo In progress üY üp. His 9/ Topo +5`UTR Salk_103692 MT-12 hetero(exon) +3 additional Salk MT-13 ) ? Intron Salk_047730
- Identity map
- Bwtree
- Problem tree solution tree
- How about the orchid to a tree is a tree benefited
- Loser tree algorithm
- Species tree
- Objective tree sample
- Difference between general tree and binary tree
- Mckinsey problem solving approach
- Convert 2-3-4 tree to red black
- Difference between plus tree and elite tree
- Problem tree and objective tree