OCTOPUS Sea Data Net Format conversion tool Michle

OCTOPUS – Sea. Data. Net Format conversion tool Michèle Fichaut - Ifremer EMODnet Chemistry 3 Training Workshop, Trieste, Italy, 18 -19 May 2017 sdn-userdesk@seadatanet. org – www. seadatanet. org

EMODnet Chemistry 3 Training Workshop, Trieste, Italy, 18 -19 May 2017 New tool: OCTOPUS • Can be downloaded from Sea. Data. Net Web site https: //www. seadatanet. org/Software/OCTOPUS • Javatool compliant with Windows and Linux, works in interactive mode and in batch • Version 1. 2, released beginning of 03/02/2017 • For Sea. Data. Net format conversion – Replace the previous tools • • Change_Vocab_V 1 to. V 2: update the BODC vocabulary from V 1 to V 2 Med 2 Med. SDN: convert old Med. Atlas to SDN Med. Atlas Med 2 SDN 2 CFPOi. NT: Convert SDN Med. Atlas to SDN Net. CDF Odv 2 SDN 2 CFPOINT: Convert SDN ODV to SDN Net. CDF – New conversions available – Possibility of splitting the input files station per station (and also to extract LOCAL_CDI_IDs from a multistation file) sdn-userdesk@seadatanet. org – www. seadatanet. org – Check of ODV and Med. Atlas format

EMODnet Chemistry 3 Training Workshop, Trieste, Italy, 18 -19 May 2017 Possible conversions Input files Output files Old Med. Atlas SDN Med. Atlas Replace Med 2 Med. SDN ODV New SDN Net. CDF New SDN Med. Atlas [NVSv 1 -NVSv 2] SDN ODV [NVSv 1 -NVSv 2] SDN Net. CDF MGD [NVSv 1 -NVSv 2] v 81 v 98 ✔ ✗ ✗ New ✔ ✗ Replace Med. SDN 2 CFPOi. NT Odv. SDN 2 CFPOINT ✔ • If input files contain NVSv 1 vocabulary Change by OCTOPUS to NVSv 2 vocabulary sdn-userdesk@seadatanet. org – www. seadatanet. org ✗ ✗ New ✗ ✗

EMODnet Chemistry 3 Training Workshop, Trieste, Italy, 18 -19 May 2017 • Can convert on file or one folder sdn-userdesk@seadatanet. org – www. seadatanet. org

EMODnet Chemistry 3 Training Workshop, Trieste, Italy, 18 -19 May 2017 • Check of the input format (ODV or Med. Atlas), input format automatically detected sdn-userdesk@seadatanet. org – www. seadatanet. org

EMODnet Chemistry 3 Training Workshop, Trieste, Italy, 18 -19 May 2017 • If format OK, green message sdn-userdesk@seadatanet. org – www. seadatanet. org

EMODnet Chemistry 3 Training Workshop, Trieste, Italy, 18 -19 May 2017 • If format KO, red message and description of the error sdn-userdesk@seadatanet. org – www. seadatanet. org

sdn-userdesk@seadatanet. org – www. seadatanet. org

EMODnet Chemistry 3 Training Workshop, Trieste, Italy, 18 -19 May 2017 sdn-userdesk@seadatanet. org – www. seadatanet. org

EMODnet Chemistry 3 Training Workshop, Trieste, Italy, 18 -19 May 2017 • Choose to split Multistation file into Monostation files or Keep the input file as it is sdn-userdesk@seadatanet. org – www. seadatanet. org

EMODnet Chemistry 3 Training Workshop, Trieste, Italy, 18 -19 May 2017 sdn-userdesk@seadatanet. org – www. seadatanet. org

EMODnet Chemistry 3 Training Workshop, Trieste, Italy, 18 -19 May 2017 • Extract CDIs from a given file sdn-userdesk@seadatanet. org – www. seadatanet. org

EMODnet Chemistry 3 Training Workshop, Trieste, Italy, 18 -19 May 2017 • List all CDIs of the input file sdn-userdesk@seadatanet. org – www. seadatanet. org

EMODnet Chemistry 3 Training Workshop, Trieste, Italy, 18 -19 May 2017 • Select the CDIs that you want to extract sdn-userdesk@seadatanet. org – www. seadatanet. org

EMODnet Chemistry 3 Training Workshop, Trieste, Italy, 18 -19 May 2017 • Only the 2 stations selected are extracted sdn-userdesk@seadatanet. org – www. seadatanet. org

EMODnet Chemistry 3 Training Workshop, Trieste, Italy, 18 -19 May 2017 • Input file with old version of vocabulary – P 011 and P 061 • Warning send to the user (orange) • Conversion to V 2 vocabulary done : P 01 and P 06 sdn-userdesk@seadatanet. org – www. seadatanet. org

EMODnet Chemistry 3 Training Workshop, Trieste, Italy, 18 -19 May 2017 OCTOPUS • Batch mode availablejava • java -jar octopus. jar [-c <arg>] [-f <arg>] [-i <arg>] [-l <arg>] [-o <arg>] [-t <arg>] -c <arg> Optional list of local_cdi_id, eg <FI 35 AAB, FI 35 AAC>, all cdi are exported if this argument is omitted -f <arg> Mandatory output format: <medatlas>, <odv> or <cfpoint> -i <arg> Mandatory input path: </home/user/. . . > -l <arg> Mandatory local CDI Id value if input is a file, mapping file is input is a if input is directory (see § 5. 5) MGD -o <arg> Mandatory output path (file or directory): </home/user/. . . > -t <arg> Mandatory output type: <split> or <keep> except if input is MGD sdn-userdesk@seadatanet. org – www. seadatanet. org

EMODnet Chemistry 3 Training Workshop, Trieste, Italy, 18 -19 May 2017 OCTOPUS – User manual • User manual is provided on line on Sea. Data. Net website: https: //www. seadatanet. org/Software/OCTOPUS • Available also on this page – FAQ – This presentation of OCTOPUS sdn-userdesk@seadatanet. org – www. seadatanet. org

EMODnet Chemistry 3 Training Workshop, Trieste, Italy, 18 -19 May 2017 Next release of Octopus • New conversion: Net. CDF ODV • New format checker: Net. CDF • Management of deprecated parameters : – replacement by the new parameter defined in the ‘Replaced by’ attributes in the vocabulary • Planned released date : Summer 2017 sdn-userdesk@seadatanet. org – www. seadatanet. org

EMODnet Chemistry 3 Training Workshop, Trieste, Italy, 18 -19 May 2017 Any questions? sdn-userdesk@seadatanet. org – www. seadatanet. org