NCBI Field Guide NCBI Molecular Biology Resources Using
NCBI Field. Guide NCBI Molecular Biology Resources Using Entrez January 2008
Entrez & BLAST NCBI Field. Guide WWW Access
NCBI Field. Guide Entrez: Database Integration Word weight Pub. Med abstracts 3 -D 3 -D Structure Homologene Gene BLAST Neighbors Related Sequences Neighbors Related Structures Protein sequences Nucleotide sequences Hard Link VAST BLAST Neighbors Related Sequences BLink Domains
Access to Neighbors and Links SNP NCBI Field. Guide The Links Menu: GEO Gene Pub. Med Protein
Access to Neighbors and Links Neighbors: BLAST Link pre-computed BLAST Neighbors: pre-computed CDD search NCBI Field. Guide The Links Menu:
Access to Neighbors and Links NCBI Field. Guide The Links Menu: Neighbors Hard Links
NCBI Field. Guide Database Searching with Entrez u. Using limits and field restriction to find human Mut. L homolog u. Linking and neighboring with Mut. L u. Mapping SNPs onto structure
colon cancer NCBI Field. Guide Global NCBI (Entrez) Search
NCBI Field. Guide Global Entrez Search Results
Nucleotide database now three parts • EST expressed sequence tags • GSS genome survey sequences • Core. Nucleotide everything else NCBI Field. Guide Nucleotide Sequences
New! Gene Preview more relevant results New! Taxonomy Filters NCBI Field. Guide Core Nucleotide Results with Gene Preview
Tabs Taxonomy filter NCBI Field. Guide Advanced Search Options
colon cancer[Title] AND nonpolyposis[Title] AND human[Organism] AND biomol_mrna[Properties] AND srcdb_refseq[Properties] NCBI Field. Guide More Precise Nucleotides Search
[Title]: Definition line in Gen. Bank / Gen. Pept format shown in Summary format glyceraldehyde 3 phosphate dehydrogenase[Title] [Organism]: NCBI’s taxonomy. Organizing system for molecular databases mouse[organism]; green plants[organism]; Streptomyces coelicolor[organism] [Properties]: molecule type, location, database source biomol_mrna[properties]; biomol_genomic[properties]; gene_in_mitochondrion[properties]; srcdb pdb[properties] [Filter]: subsets of data, Entrez links all[filter]; nucleotide mapview[filter]; nucleotide omim[filter] NCBI Field. Guide Useful Field Restrictions
Entrez Protein Other Entrez DBs BLink Gene Homologene: Gene Neighbors Homolo. Gene Uni. Gen e NCBI Field. Guide Entrez Tip: Start Searches in Gene
nonpolyposis colon cancer AND human[Organism] NCBI Field. Guide Gene Results
MLH 1[Gene Name] AND Human[Organism] NCBI Taxonomy NCBI Field. Guide Precise Results
All molecular databases NCBI Field. Guide Organism Field: NCBI’s Taxonomy
NCBI Field. Guide MLH 1 Gene Record
NCBI Field. Guide MLH 1 Gene Record: Interactions and GO
NCBI Field. Guide MLH 1 Sequences
NCBI Field. Guide MLH 1 Gene Record: Sequences
NCBI Field. Guide MLH 1: Sequence Links
NCBI Field. Guide Gene Table: Genomic Sequences
Customizable Transcripts EST Hits Download data and sequences Models NCBI Assembly Gene Annotations NCBI Field. Guide Map Viewer: All Sequences
NCBI Field. Guide MLH 1 Homologs
Albumin Gene Family NCBI Field. Guide Synteny: Mammalian Genomes
Gene NCBI Field. Guide Finding Homologs: Homolo. Gene
Homolo. Gene Cluster Gene Links Protein Links
Homolo. Gene Downloader Protien m. RNA Genomic
Gene Protein NCBI Field. Guide Finding Homologs 2: BLink
Redundant Proteins First 200 only Tomato homolog BLAST NCBI Field. Guide BLink: BLAST Link (Best Hits)
Gene NCBI Field. Guide Finding Polymorphisms
NCBI Field. Guide Gene. View: Variations Human MLH 1 ATPase domain
NCBI Field. Guide MLH 1 Structure Model and Mapping Polymorphisms
NCBI Field. Guide Related Structures: structure model
Conserved Domain Link to Structure Link to Alignment NCBI Field. Guide Sequence Similar Structures
Cn 3 D viewer Conserved Domains NCBI Field. Guide E. coli Mut. L Structure
Mg 2+ binding site Ile - Val NCBI Field. Guide Alignment Based Model: Mapping Polymorphisms
Gene Protein Related Structures NCBI Field. Guide Better Model: Conserved Domain
Mg 2+ binding site Ile – Val Position 32 NCBI Field. Guide Better Model: Conserved Domain
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