Metagenomics Microbial community DNA extraction Thousands of unique
Metagenomics Microbial community DNA extraction Thousands of unique genomes are present in most environments
Global Ocean Sampling (GOS) About 200 Sampling Locations to date Open ocean, estuary, embayment, upwelling, fringing reef, atoll, warm seep, mangrove, fresh water, biofilms, sediments, soils Phase I: 41 samples analyzed (PLo. S Biology 2007 – Rusch et. al, Yooseph et. al, Kannan et. al. ) ~6 million predicted conserved proteins, doubling number in public databases Microbial biodiversity FAR exceeded expectations Phase 2 to Come: 100 GOS sites; >10 M sequence reads; biofilms, sediments, soils
CAMERA Services (Community Cyberinfrastructure for Advanced Marine Microbial Ecology Research and Analysis) • Maintain metagenomic sequence collections - ALL metagenomic sequence reads and assemblies - Country of origin identified - CAMERA protein clusters and other large analyses • Most powerful genetics search facility on Internet - Scalable parallel implementations of BLAST • Free-to-all tools (including compute time) - Up-to-date annotation of metagenomic data • Training, Support, and Outreach
“As a condition of my use of the CAMERA website, I acknowledge and agree that the genetic information available through the CAMERA website may be considered part of the genetic patrimony of the country from which the sample was obtained. “As a user, I agree to: 1) acknowledge the country of origin in any publications where the genetic information is presented; 2) contact the CBD focal point identified on the CBD-website if I intend to use the genetic information for commercial purposes. ”
Geographic Distribution of Registrations Over 2300 Registered Users From 48 Countries
- Slides: 7