Meatgenome Analysis Project Bioinformatics 301 Prepared by Michael
Meatgenome Analysis Project Bioinformatics 301 Prepared by Michael kassa
Read and similarities OCTHSE. ATYB 5997 -B 2 and OCTHSE. ATYB 5997 -G 2 Length =1022 First match Oct. HSe. ATYB 4301 -b 2 Length=969 Q-start = 904 Q-end=1014 T-start =1 T-end =111 Second match Oct. HSe. APNO 659 -b 2 Length=923 Q-start = 1606 Q-end=1870 T-start =1 T-end =111 Third match Oct. HSe. APNO 3102 -b 2 Length=942 Q-start = 2398 Q-end=2525 T-start =14 T-end =141
Extended Read Brown = Oct. HSe. ATY 5997 -b 2 (my Read) Green =Oct. HSe. APN 4301 -b 2; Blue = Oct. HSe. APN-b 2; orange =Oct. HSe. APNO 3102 -b 2 1 905 1014 1606 1872 2398 2525 3326
Predicted Genes
NCBI Blast Result protein database using a translated nucleotide
NCBI Blast Result protein database using a translated nucleotide continued….
Reading- Frames-Of the extended sequence
Reading- Frames-Of the extended sequence from Bio. Bike • • • (B 150 458) (B 688 1167) (B 1142 1768) (B 2062 2481) (B 2494 2847) (B 2878 3234) • Results are similar with the results I found using NCBI
Protein Result from Bio. Bike NC_007652. p-gene 0008 Sequence-Length =585 Class – Eukaryotic- Virus Organism- Metapneumovirus Human metapneumovirus (h. MPV) was isolated for the first time in 2001 in the Netherlands, by using the RAP-PCR (RNA arbitrarily primed PCR) technique for identification of unknown viruses growing in cultured cells.
- Slides: 9