GMOD Update Progress since last year Plans for

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GMOD Update Progress since last year Plans for the coming year 5/8/06 Software releases

GMOD Update Progress since last year Plans for the coming year 5/8/06 Software releases Notable new users Schema enhancements New GMOD website/Demo site Software releases Cooperative agreements mod. ENCODE Website/Demo site improvements Scott Cain Stein Lab Retreat, 2006

Software Releases GBrowse (Lincoln Stein) Apollo (Mark Gibson & Nomi Harris) CMap (Ben Faga

Software Releases GBrowse (Lincoln Stein) Apollo (Mark Gibson & Nomi Harris) CMap (Ben Faga and Ken Clark) gmod 0. 003 (alpha) (Scott Cain) Luce. Gene (a lucene based gbrowse adaptor) (Don Gilbert) Flash. GViewer (Simon Twigger) blast. Graphic (Developers at SGD) Scott Cain Stein Lab Retreat, 2006 5/8/06

Notable Users Paramecium. DB NESCent Gramene (for the HS instructional grant) Over 150 organizations

Notable Users Paramecium. DB NESCent Gramene (for the HS instructional grant) Over 150 organizations use GMOD software Scott Cain Stein Lab Retreat, 2006 5/8/06

Schema improvements GODB bridge—can now run Ami. GO on Chado (Allen Day) Cleaner separation

Schema improvements GODB bridge—can now run Ami. GO on Chado (Allen Day) Cleaner separation of genotypes and phenotypes; should make it easier for evolutionary biologists (Chris Mungall) Greatly improved loading tools (over 0. 003 release) (Scott Cain) Scott Cain Stein Lab Retreat, 2006 5/8/06

New GMOD Web/Demo Site www. gmod. org migrated to brebiou from Source. Forge. net

New GMOD Web/Demo Site www. gmod. org migrated to brebiou from Source. Forge. net Running Drupal CMS Obtained a new demo server (gmod. cshl. edu); currently running a yeast comparative genome database with turnkey, gbrowse, cmap, apollo, and biomart (See poster tomorrow or Thursday(? )) Scott Cain Stein Lab Retreat, 2006 5/8/06

To Do: Software releases GBrowse 1. 65: fixes since 1. 64 (RSN) GBrowse 1.

To Do: Software releases GBrowse 1. 65: fixes since 1. 64 (RSN) GBrowse 1. 66: templates (2 nd half 2006) gmod 0. 01 (RSN) GMODTools (? , Don Gilbert) gmod-ware (Eric Just at Dicty. Base) Turnkey (? , Allen Day & Brian O'Connor) CMap 0. 16? (RSN) Bio. Pipe (Olivier Arnaiz) Scott Cain Stein Lab Retreat, 2006 5/8/06

Cooperative Agreements NESCent: Next GMOD meeting there on June 2930 Ian Holmes group for

Cooperative Agreements NESCent: Next GMOD meeting there on June 2930 Ian Holmes group for GBrowse-AJAX Scott Cain Stein Lab Retreat, 2006 5/8/06

mod. ENCODE Submitting a joint grant with UCSC to provide a data center for

mod. ENCODE Submitting a joint grant with UCSC to provide a data center for worm/fly ENCODE projects using a chado database and GMOD tools. Scott Cain Stein Lab Retreat, 2006 5/8/06

Web/Demo Site Improvements I'm pretty happy with the website, but is anybody else? Will

Web/Demo Site Improvements I'm pretty happy with the website, but is anybody else? Will run a poll and ask for suggestions. Need to continue to add docs and FAQs. For Demo site: Add more databases ('reference implementations') Stabilize turnkey Provide an 'editable' database to allow Apollo edits? Make a unified css Migrate www. gmod. org to gmod. cshl. edu? Scott Cain Stein Lab Retreat, 2006 5/8/06

GMOD Help Desk Dave Clements GMOD Help DeskGMOD Help Desk Dave Clements GMOD Help Desk
The State of GMOD Scott Cain GMOD ProjectThe State of GMOD Scott Cain GMOD Project
GMOD Architecture Working Group GMOD Summer 2006 PreparedGMOD Architecture Working Group GMOD Summer 2006 Prepared
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