Generating Multiple Sequence Alignments with Clustal W Clustal
- Slides: 21
Generating Multiple Sequence Alignments with Clustal. W
Clustal. W: creating a multiple sequence alignment • You identify sequences to align • Get Fasta sequences and copy and paste into window or put all sequences in one document and attach (example: copy and paste into one Word document)
Clustal. W: Creating the initial alignment
Clustal. W: The Alignment Report
Clustal. W: The Alignment Report
Clustal. W: The Alignment Report
Clustal. W: The Alignment Report
Clustal. W: Jalview
Clustal. W: Jalview
Clustal. W: Jalview
Clustal. W: creating a phylogenetic tree • Clustal. W can only assemble a phylogenetic tree from multiple sequence alignments generated by Clustal. W
Clustal. W: Making a Phylogenetic Tree
Clustal. W: Making a Phylogenetic Tree
Clustal. W: Making a Phylogenetic Tree
Clustal. W: Making a Phylogenetic Tree Must use Clustal aligned sequences & include “Clustal” line
Clustal. W: Making a Phylogenetic Tree
Clustal. W: Making a Phylogenetic Tree • Phylogram: tree that provides an estimate of a phylogeny, where the branch lengths are proportional to the amount of evolutionary divergence. • Cladogram: tree that provides an estimate of phylogeny where the branches are of equal length: therefore cladograms indicate common ancestry, but do not reflect amount of evolutionary time separating sequences.
Clustal. W: The Phylogram Tree
Clustal. W: The Cladogram Tree
Clustal. W: Practice Weblem • Align the refseq protein sequences of Arabidopsis thaliana RDR 6, Schizosaccharomyces pombe Rdp 1, Caenorhabditis elegans rrf-2, Caenorhabditis elegans rrf-3, and Aspergillus fumigatus Sad-1 using Clustal. W. Print out this alignment. • Generate and print out a phylogram and cladogram using this alignment. • Given what you know about the evolutionary relationships between these organisms, does the phylogram and cladogram make sense? Why or why not?
- Dodaf
- Allineamento multiplo
- Clustal omega reference
- Guide tree
- Simple phylogeny ebi
- Tcoffee multiple sequence alignment
- Multiple probe vs multiple baseline
- Disadvantages of mimd
- Pasta alignment
- Praline multiple sequence alignment
- Time sequence of multiple interrupts
- Progressive alignment
- Tcoffee multiple sequence alignment
- The sequence of statements inside a function definition
- Differentiate finite sequence and infinite sequence
- Convolutional sequence to sequence learning
- Nucleotide sequence vs amino acid sequence
- Pseudocode selection
- Generating sentences from a continuous space
- Gamma function properties
- Gst notification on solar power generating system
- Nopdrm