FLOWCYTOMETRY What Is Flow Cytometry Flow cells in

FLOWCYTOMETRY

What Is Flow Cytometry? Flow ~ cells in motion Cyto ~ cell Metry ~ measure Measuring properties of cells while in a fluid stream

Applications of Flow Cytometry. • Cell size. • Cytoplasmic granularity. • Cell surface antigens (Immunophenotyping). • Apoptosis. • Intracellular cytokine production. • Intracellular signalling. • Gene reporter (GFP). • Cell cycle, DNA content, composition, synthesis. • Bound and free calcium. • Cell proliferation • Cell sorting, single cell cloning

Principle of Flow Cytometry Fluidics • Cells in suspension • Cells flow in single-file • Intercepted by light source(s) (laser) Optics • Scatter light and emit fluorescence • Signal collected, filtered and • Converted to digital values Electronics • Storage on a computer Data display and analysis

Basic Principles of Flow Cytometry Single cell or particle suspension Fluorescent dyes or Abs that can be attached to an antigen or protein of interest Flow cell, sheath fluid and a focused laser beam

The Flow Cell Sheath Cell Sample Stream The introduction of a large volume into a small volume in such a way that it becomes “focused” along an axis is called Hydrodynamic Focusing.

Basic Principles cont’d Light is either scattered or absorbed when it strikes a cell Light scatter is dependent on the internal structure, size and shape. Forward scatter = size of the cell Side Scatter = complexity of the cell

Forward Scatter Laser Beam FSC Detector

Side Scatter Laser Beam FSC Detector Collection Lens SSC Detector

Side scatter Granulocytes Monocytes Lymphocytes Forward scatter

Why Look at FSC v. SSC Since FSC ~ size and SSC ~ internal structure, a correlated measurement between them can allow for differentiation of cell types in a heterogeneous cell population Granulocytes SSC Lymphocytes Monocytes RBCs, Debris, Dead Cells FSC

Side scatter Granulocytes Monocytes Lymphocytes Forward scatter

FLOW CYTOMETRY - Cells are labeled with fluorescent antibodies directed against cell surface molecules - Using different color fluorochromes allows counting of many markers simultaneously and allows identification of several markers on the same cell ( Multiparameter Flow) - In the instrument, cells pass one-by-one past a laser to excite the fluorochromes and there are detectors for each type of fluorochrome

- cells are labeled with fluoresence antibodies Flouresent tag Surface of a cell, e. g. , a lymphocyte (in solution)

What Happens in a Flow Cytometer

Fluorochrome

Basic Principles cont’d Fluorescent dyes absorb light of a specific wavelength and reemit light of a different wavelength Fluorescent signals are detected by PMT and amplified Optical filters are used to steer light of specific wavelengths to the photo detector Reflected Dichroic Filter Passed Short or Long Pass Filter Band Pass Filter Adsorbed Absorption Filter

Detectors There are two main types of photo detectors used in flow cytometry Photodiodes Used for strong signals, when saturation is a potential problem (eg. FSC detector) Photomultiplier tubes (PMT) More sensitive than a Photodiode, a PMT is used for detecting small amounts of fluorescence emitted from fluorochromes.

Electronics Electrical pulses are digitized, the data is stored (‘list mode data’), analysed and displayed through a computer system. The end result is quantitative information about every cell analysed Large numbers of cells can be processed quickly

THE OPERATOR SETS “GATES” DEFINING POSITIVE AND NEGATIVE FOR EACH MARKER. CD 19+ CD 3 - CD 19+ CD 3 - CD 3 + CD 3+ CD 19 - CD 19 CD 3+ CD 3 Therefore, you can define each cell counted with regard to CD 19 or CD 3 positivity. Note that there are not normally cells in the circulation that express both T and B cell surface markers.