Figure 5 1 Giant panda Ailuropoda melanoleuca Figure
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Figure 5. 1 Giant panda (Ailuropoda melanoleuca)
Figure 5. 2 A coalescence tree with six leaf nodes representing six DNA sequences
Figure 5. 3 A histogram showing the distribution of values of p in 100, 000 coalescence simulations under the standard coalescence model with infinite sites mutation and q = 2. 6
Figure 5. 4 A tree and a set of binary sequences, which together are not compatible with the infinite sites model
Figure 5. 5 Reciprocal monophyly (A) and incomplete lineage sorting (B)
Figure 5. 5 (A) Reciprocal monophyly
Figure 5. 5 (B) Incomplete lineage sorting
Figure 5. 6 The coalescence tree may (red) or may not (blue) match the structure of the species tree (black)
Figure 5. 7 Human mt. DNA tree
Figure 5. 8 Coalescence trees produced by different demographic and historical processes
Figure 5. 8 Coalescence trees produced by different demographic and historical processes (Part 1)
Figure 5. 8 Coalescence trees produced by different demographic and historical processes (Part 2)
Figure 5. 8 Coalescence trees produced by different demographic and historical processes (Part 3)
Figure 5. 9 The likelihood function for q under the standard coalescence model with infinite sites mutation when n = 2 and the two sequences differ by six nucleotide sites
Figure 5. 10 Likelihood surfaces for the migration rate parameter M (= 2 Nm) for two populations of sticklebacks from the Western and Eastern Pacific Ocean
Figure 5. 11 Distribution of chimpanzee subspecies and the posterior distribution of the migration rates between Eastern, Central, and Western chimpanzees estimated using MCMC method
Figure 5. 11 Distribution of chimpanzee subspecies and posterior distribution of the migration rates between Eastern, Central, and Western chimpanzees estimated using MCMC method (Part 1)
Figure 5. 11 Distribution of chimpanzee subspecies and posterior distribution of the migration rates between Eastern, Central, and Western chimpanzees estimated using MCMC method (Part 2)
Figure 5. 12 A star phylogeny: the expected average tree when many loci from a randomly mating population are analyzed simultaneously
Figure 5. 13 The site frequency spectrum (SFS) for a sample of African Americans for 5982 SNPs
Figure 5. 14 The joint site frequency spectrum (SFS) for a Tibetan and a Han Chinese population estimated for a genome-wide data set of all protein-coding genes
Figure 5. 15 Admixture analysis of 1056 individuals from 52 populations for 377 microsatellite loci
Figure 5. 16 A PCA analysis of 3000 European individuals, using 500, 000 SNPs for each individual
Figure 5. 16 A PCA analysis of 3000 European individuals, using 500, 000 SNPs for each individual (Part 1)
Figure 5. 16 A PCA analysis of 3000 European individuals, using 500, 000 SNPs for each individual (Part 2)
Equations 5. 1– 5. 3
Exercise 5. 1, Table 1
Exercise 5. 2, Figure 1
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- National animal of germany
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- Panda root
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- Acrostic of success
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