Exercises Motif detection and Screening 09112006 OVERVIEW Exercises

  • Slides: 25
Download presentation
Exercises Motif detection and Screening 09112006

Exercises Motif detection and Screening 09112006

OVERVIEW Exercises Sequence Blast Identify homologs INCLUsive Select Intergenics Phylogenetic footprinting Genome wide screening

OVERVIEW Exercises Sequence Blast Identify homologs INCLUsive Select Intergenics Phylogenetic footprinting Genome wide screening Motif Sampler/ RSA Motif Scanner/ RSA

Exercises SELECTION INTERGENIC SEQUENCES

Exercises SELECTION INTERGENIC SEQUENCES

Exercises SELECTION INTERGENIC SEQUENCES

Exercises SELECTION INTERGENIC SEQUENCES

Exercises SELECTION INTERGENIC SEQUENCES

Exercises SELECTION INTERGENIC SEQUENCES

Exercises Motif Detection

Exercises Motif Detection

OVERVIEW Exercises Sequence Blast Identify homologs INCLUsive Select Intergenics Phylogenetic footprinting Genome wide screening

OVERVIEW Exercises Sequence Blast Identify homologs INCLUsive Select Intergenics Phylogenetic footprinting Genome wide screening Motif Sampler/ RSA Motif Scanner/ RSA

Exercises Motif Detection: Gibbs

Exercises Motif Detection: Gibbs

Exercises Motif Detection: Gibbs

Exercises Motif Detection: Gibbs

Exercises Motif Detection: Gibbs

Exercises Motif Detection: Gibbs

Exercises Motif Detection: Gibbs Regular expression Consensus: TTGATCTAGATCAA

Exercises Motif Detection: Gibbs Regular expression Consensus: TTGATCTAGATCAA

Exercises Motif Detection: RSA

Exercises Motif Detection: RSA

Exercises Motif Detection: RSA

Exercises Motif Detection: RSA

Exercises Motif Detection: RSA

Exercises Motif Detection: RSA

Exercises Motif Detection: RSA

Exercises Motif Detection: RSA

Exercises Motif Detection: RSA

Exercises Motif Detection: RSA

OVERVIEW Exercises Sequence Blast Identify homologs INCLUsive Select Intergenics Phylogenetic footprinting Genome wide screening

OVERVIEW Exercises Sequence Blast Identify homologs INCLUsive Select Intergenics Phylogenetic footprinting Genome wide screening Motif Sampler/ RSA Motif Scanner/ RSA

Exercises CONSENSUS

Exercises CONSENSUS

Exercises CONSENSUS

Exercises CONSENSUS

Exercises REGULAR EXPRESSION

Exercises REGULAR EXPRESSION

Exercises Motif. Scanner

Exercises Motif. Scanner

Motif. Scanner Exercises score start stop consensus hit

Motif. Scanner Exercises score start stop consensus hit

Exercises Eco. CYC

Exercises Eco. CYC

Eco. CYC Exercises cyd. A encodes a terminal oxidase Its regulation by FNR was

Eco. CYC Exercises cyd. A encodes a terminal oxidase Its regulation by FNR was to be expected

Exercises Eco. CYC yej. G is a novel protein with unknown function But from

Exercises Eco. CYC yej. G is a novel protein with unknown function But from in silico analysis you know it might be regulated by O 2