Exercises Motif detection and Screening 09112006 OVERVIEW Exercises
- Slides: 25
Exercises Motif detection and Screening 09112006
OVERVIEW Exercises Sequence Blast Identify homologs INCLUsive Select Intergenics Phylogenetic footprinting Genome wide screening Motif Sampler/ RSA Motif Scanner/ RSA
Exercises SELECTION INTERGENIC SEQUENCES
Exercises SELECTION INTERGENIC SEQUENCES
Exercises SELECTION INTERGENIC SEQUENCES
Exercises Motif Detection
OVERVIEW Exercises Sequence Blast Identify homologs INCLUsive Select Intergenics Phylogenetic footprinting Genome wide screening Motif Sampler/ RSA Motif Scanner/ RSA
Exercises Motif Detection: Gibbs
Exercises Motif Detection: Gibbs
Exercises Motif Detection: Gibbs
Exercises Motif Detection: Gibbs Regular expression Consensus: TTGATCTAGATCAA
Exercises Motif Detection: RSA
Exercises Motif Detection: RSA
Exercises Motif Detection: RSA
Exercises Motif Detection: RSA
Exercises Motif Detection: RSA
OVERVIEW Exercises Sequence Blast Identify homologs INCLUsive Select Intergenics Phylogenetic footprinting Genome wide screening Motif Sampler/ RSA Motif Scanner/ RSA
Exercises CONSENSUS
Exercises CONSENSUS
Exercises REGULAR EXPRESSION
Exercises Motif. Scanner
Motif. Scanner Exercises score start stop consensus hit
Exercises Eco. CYC
Eco. CYC Exercises cyd. A encodes a terminal oxidase Its regulation by FNR was to be expected
Exercises Eco. CYC yej. G is a novel protein with unknown function But from in silico analysis you know it might be regulated by O 2
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