Different Genes Protein Primary Structure Different Primary Sequences
- Slides: 32
Different Genes ~ Protein Primary Structure Different Primary Sequences ~ 3 D Structure Relative scale of conservation Genes << Primary Structure << 3 D Structure
Gene Bioinformatics Protein - Mechanism of action / biological role - Evolutionary studies, protein folding. . . - Therapeutic applications: drug/vaccine design - Biotechnological applications: diagnostics, products
1) Domain Organisation and Function Collagen Integrin I II Fibrin Heparin I FN 7 III FN 8 -10 FN 12 -14 IIIIII III Integrin III III I S, S Heparin Integrin - involved in cell adhesion, migration, matrix formation - binds to fibrin, integrin, heparin, collagens, gelatin, DNA - modular architecture consisting of type I, II and III repeats - FN 7 -10 binds integrins via the amino acid sequence RGD - FN 12 -14 binds heparin and integrin
Heparin binding Integrin binding
Integrin binding Heparin binding
GLOBAL INFORMATION FROM GENOMES MASS 2 D GE BIO-INFO SPEC
PROTEOMICS - GLOBAL INFORMATION FROM GENOMES (m. RNA EXPRESSION STUDIES) - CLASSICAL REDUCTIONIST APPROACHES
BIOCHEMICAL REDUCTIONIST APPROACHES # aa, mol. wt. , p. I, extinction coeff. Glycosylation Signal sequence Transmembrane segments Modifications (> 200) Protease cleavage sites Secondary structure prediction Function Fold, family, homologues 3 D structure Mutagenesis data Higher order complexes Expression Strategy Purification Strategy
P 16893 N C SS A-domain TM/CYT 200 aa TRM RGD Proline-rich region
- Linked genes and unlinked genes
- Homeotic genes
- Linked genes and unlinked genes
- Non protein coding genes
- Non protein coding genes
- Compare two protein sequences
- Fibroin secondary structure
- Protein function
- Primary secondary tertiary quaternary structure
- Protein primary structure
- Primary secondary and tertiary protein structure
- Protein primary structure
- Type of enzyme inhibition
- Primary secondary and tertiary structure of protein
- Myoglobin primary structure
- Protein pump vs protein channel
- Protein-protein docking
- Alpha helix and beta sheet
- Super secondary structure of protein
- Carbonbased molecules found in
- Amino acids classification
- Quaternary structure of protein
- Protein tertiary structure bonds
- Protein structure
- Hierarchy of protein structure
- Anomalous
- Protein structure
- Beta meander motif
- Super secondary structure of protein
- Hierarchy of protein structure
- Protein tertiary structure bonds
- Hwa direct energy
- Secondary structure protein