Data in Context Elsevier use case Mike Jones

Data in Context: Elsevier use case Mike Jones – Sr. Product Manager Mendeley Data, Elsevier Presented By Date Elsevier company confidential. For internal use only.

Supplying metadata for data – 2 examples 1. Mendeley Data store & share 2. Research Elements (data & software journals) publish & re-use 2

Mendeley Data collects rich metadata for research datasets • Attribution: o o • Citation: o • • • datasets receive a DOI and can be cited; Versioning, including comparison Availability: o o o • Person(s) Institution(s) Datasets are long-term archived; Licensed; Embargo period is possible. Authors can describe their methods, increasing re-use and reproducibility; Related links to software/publications/etc. https: //data. mendeley. com 3

Mendeley Data: dataset example Researcher in control (embargo / visible) Links to published papers Data citation (Data. Cite) Versioning and provenance https: //data. mendeley. com/datasets/xz 6 gv 65 m 6 d/6 2

Dataset can be presented in context of associated articles 4

Research Elements: articles to publish data, software, methods etc • Brief article types designed to communicate a specific element of the research cycle • Focus on data re-use and reproducibility • Peer-reviewed and indexed • Article templates contain metadata section • Receive a DOI and fully citable • Allow citable post-publication updates • Primarily Open Access (CC-BY) • Published in multidisciplinary and domain-specific journals Full Research paper Lab resources Method articles Protocol articles Video articles Data articles More info: https: //www. elsevier. com/books-and-journals/research-elements Hardware articles Software articles 6

Data in Brief data article template contains structured metadata 8

8 Data in Brief publishes data articles to facilitate data re-use Data can be directly accessed from the article and in displayed in context with the article http: //www. journals. elsevier. com/data-in-brief

Software. X publishes software and software updates http: //www. journals. elsevier. com/softwarex/

Software. X template contains structured metadata for source code Code metadata description Please fill in this column Current code version For example v 42 Permanent link to code/repository used of this code version For example: https: //github. com/mozart 2 Legal Code License List one of the approved licenses Code versioning system used For example svn, git, mercurial, etc. put none if none Software code languages, tools, and services used For example C++, python, R, MPI, Open. CL, etc. Compilation requirements, operating environments & dependencies If available Link to developer documentation/manual For example: http: //mozart. github. io/documentation/ Support email for questions 5

Software. X template contains structured metadata for software (Executable) software metadata description Please fill in this column Current software version for example 1. 1, 2. 4 etc. Permanent link to executables of this version For example: https: //github. com/combogenomics/Duct. Ape/release s/tag/Duct. Ape-0. 16. 4 Legal Software License List one of the approved licenses Computing platforms/Operating Systems For example Android, BSD, i. OS, Linux, OS X, Microsoft Windows, Unix-like , IBM z/OS, distributed/web based etc. Installation requirements & dependencies If available, link to user manual - if formally For example: http: //mozart. github. io/documentation/ published include a reference to the publication in the reference list Support email for questions

Lab resources are structured, concise descriptions of original laboratory resources (e. g. plasmids, transgenic animals, antibodies, molecular probes, cell lines, instruments, etc. ) Unique name / Identifier e. g. : 1001 -18 -Xi. PSC Institution e. g. : UCLA Person who created resource Researcher 1, Researcher 2 Contact person and email Researcher 1, researcher 1@university. edu Date archived/stock date e. g. : Feb 11, 2008 Origin e. g. : human skin cells Type of resource e. g. : Biological reagent: induced pluripotent stem cell (i. PS); derived or genetically modified? Subtype e. g. : cell line Key transcription factors e. g. : Oct 4, Sox 2, c. Myc, Klf 4 Authentication e. g. : Identity and purity of cell line confirmed (Figure 1) Link to related literature If more than 5, include only links and place full bibliographic details in the reference list at the end of the manuscript Information in public databases Link to any record about this resource in other databases. Please use the format “database name: database record ID” e. g. GEO: GSE 27196, OMIM: 601240, etc. Ethics Patient informed consent obtained / Ethics Review Board-competent authority approval obtained http: //www. journals. elsevier. com/stem-cell-research/ 12

Thank you! Any questions?