ANFINSEN AMINO ACID SEQUENCE DETERMINES PROTEIN SHAPE A

ANFINSEN: AMINO ACID SEQUENCE DETERMINES PROTEIN SHAPE

A proportion of all newly-made proteins require assistance to convert from a linear chain of amino acids to a functional three -dimensional entity. This process is called protein folding. Chaperonins are protein complexes that assist the folding of these nascent, non-native polypeptides into their native, functional state. These proteins belong to a large class of molecules that assist protein folding, called molecular chaperones. These molecular machines use chemical energy, in the form of adenosine triphosphate (ATP), to promote protein folding in all cells.

A chaperone (or occasionally chaperon) is an adult who accompanies or supervises one or more young, unmarried men or women during social occasions, usually with the specific intent of preventing inappropriate social or sexual interactions or illegal behavior (e. g. , underage drinking or illegal drug use). The chaperone is typically accountable to a third party, usually the parents of one of the accompanied young people. The word derives figuratively from the French word chaperon, meaning "hood", and later a kind of hat. This is either from this sense or from falconry, where the same word meant the hood placed over the head of a bird of prey to stop its desire to fly. Traditionally, a chaperone was an older married or widowed woman accompanying a young woman when men would be present. Her presence was a guarantee of the virtue of the young woman in question.

A chaperonin called Gro. EL-Gro. ES complex (from Escherichia coli) (PDB code=1 aon). Two rings of 7 x 2 Gro. EL proteins (shown in blue and green) with a cap (just on one side) of Gro. ES proteins (red and yellow). Unfolded proteins enter that cavity (which is protein sized) to be protected during folding

Heat shock proteins (HSP) are a class of functionally related proteins whose expression is increased when cells are exposed to elevated temperatures or other stress. This increase in expression is transcriptionally regulated. The dramatic upregulation of the heat shock proteins is a key part of the heat shock response and is induced primarily by heat shock factor (HSF). HSPs are found in virtually all living organisms, from bacteria to humans. Heat-shock proteins are named according to their molecular weight. For example, Hsp 60, Hsp 70 and Hsp 90 (the most widely-studied HSPs) refer to families of heat shock proteins on the order of 60, 70 and 90 kilodaltons in size, respectively.

Hsp 90 (heat shock protein 90) is a molecular chaperone and is one of the most abundant proteins expressed in cells. It is a member of the heat shock protein family which is upregulated in response to stress. Hsp 90 is found in bacteria and all branches of eukarya, but it is apparently absent in archaea. Heat shock protein 90 (Hsp 90) is one of the most common of the heat related proteins. The protein is named "HSP" for obvious reasons whereas the "90" comes from the fact that it weighs roughly 90 kilo. Daltons. A 90 k. Da size protein is considered a fairly large for a non-fibrous protein.

family subcellular location subfamily HSP 90 A cytosolic HSP 90 AA (inducible) gene protein HSP 90 AA 1 Hsp 90 -α 1 HSP 90 AA 2 Hsp 90 -α 2 HSP 90 AB 1 (constitutively expressed) Hsp 90 -β HSP 90 B endoplasmicr eticulum HSP 90 B 1 GRP 94 TRAP mitochondrial TRAP 1 TNF Receptor Associated Protein 1

Protein folding and chaperone Hsp 90 is known to associate with the non-native structures of many proteins which has lead to the proposal that Hsp 90 is involved in protein folding in general. Furthermore Hsp 90 has been shown to suppress the aggregation of a wide range of "client" or "substrate" proteins and hence acts as a general protective chaperone. However Hsp 90 is somewhat more selective than other chaperones.

Interaction with steroid receptors

Cancerous cells over express a number of proteins, including growth factor receptors, such as EGFR, or signal transduction proteins such as PI 3 K and AKT (Inhibition of these proteins may trigger apoptosis). Hsp 90 stabilizes various growth factor receptors and some signaling molecules including PI 3 K and AKT proteins, hence inhibition of Hsp 90 may induce apoptosis through inhibition of the PI 3 K/AKT signaling pathway and growth factor signaling generally.

Native disorder explained The majority of water-soluble proteins have structures that are globular and relatively static. However, some proteins have regions that are natively disordered. Disordered regions are flexible, dynamic and can be partially or completely extended in solution. Native disorder also exists in global structures such as extended random coil proteins with negligible secondary structure or molten globules, which have regular secondary structure elements but have not condensed into a stable globular fold. The primary function of disorder appears to be molecular recognition of proteins and nucleic acids. It has been speculated that the multiple metastable conformations, adopted by disordered binding sites, allows recognition of several targets with high specificity and low affinity. Order to disorder transitions also provide a mechanism for controlling protein concentration via proteolytic degradation. Disordered regions are often characterised by low sequence complexity, compositional bias toward aromatic and hydrophilic residues and high flexibility. The absence of a static structure means that disordered residues do not appear in the electron density maps obtained by X-ray crystallography but they can be investigated using other types of spectroscopy such as circular dichroism and NMR.