7 th AQUAdeb meeting Bas Kooijman Dept theoretical
7 th AQUAdeb meeting Bas Kooijman Dept theoretical biology Vrije Universiteit Amsterdam Bas@bio. vu. nl http: //www. bio. vu. nl/thb/ Nantes, 2010/04/27
Updates DEBlab DEB 3: comments concept-summary notation errata micro-lectures exercises DEBtool: see “what is new? ” in the manual add_my_pet: 49 entries Life cycles (APG III, 2009) http: //www. bio. vu. nl/thb/deblab/
Graduations 2010 Effects of mixtures explained: From laboratory tests to effects in the environment 2010/01/18 Baas, Jan 2010/06/29 Bontje, Daniel 2010/10/? ? Freitas, Vania Analysis of toxic effects and nutrient stress in aquatic systems “Predator growth in relation to prey abundance” 2011/? ? Marques, Gonçalo “Life Engine” 2011/? ? Augustine, Starrlight “Effects of Uranium on zebrafish” 2012/? ? Saraiva, Sofia “Mussel eco-energetics” 2012/? ? Emmery, Antoine “Isotope dynamics in oyster larvae”
Network & Contacts = Japan (Yokohama) in DEB-tuna's; Marko Jusup visited A'dam 2010/02/07 -13 = New Zealand (Liggins Inst, Auckland) in human obesity; Anne-Thea Mc. Gill will visit A'dam 2010/07/08 -09 = Finland (Helsinki) in DEB-stochasticity; I visited Ido Filin 2010/03/22 -25 = Australia (St Lucia) in bryozoan-physiology; Craig White (working with Mike Kearney, Melbourne) = Germany (Aachen) in starvation of Notonectus; Andreas Gergs will visit A’dam 2010/06/01 -31 (working with Tjalling)
Proposals = Jan Baas applied for Long Range Research Initiative (LRI) CEFIC - The European Chemical Industry Council: first selection OK = Tjalling Jager applied for NSF-Vidi at VUA: 2010/02; first selection OK = I applied for ERC-Ad. G (with Lisbon & Marseille): 2010/03 = 2011/01 -ITN-call for DEB-training = future funding for AQUAdeb?
PTRS 2010 1. 2. 3. 4. 5. 6. 7. 8. 9. 10. 11. 12. 13. 14. Tânia Sousa & Tiago Domingos & Jean-Christophe Poggiale & Bas Kooijman Formalised DEB theory restores coherence in core biology Susana Vinga & Rute Neves & Helena Santos & Bernd Brandt & Bas Kooijman DEB applications at the molecular scale Ingeborg van Leeuwen & Julio Vera González & Olaf Wolkenhauer Dynamic Energy Budget approaches for modelling organismal ageing Laure Pecquerie & Roger Nisbet & Ronan Fablet & Anne Lorrain & Bas Kooijman The impact of metabolism on stable isotope dynamics Michael Kearney & Steve Simpson & David Raubenheimer & Brian Helmuth Modelling the ecological niche from functional traits Virginie Ducrot & Alexandre Péry & Laurent Lagadic Modelling long-term effects of diquat under realistic patterns of exposure in genetically differentiated populations of the freshwater gastropod Lymnaea stagnalis Jean-Christophe Poggiale & Melika Baklouti & Bernard Queguiner & Bas Kooijman How far details are important in ecosystem modelling: the case of multi-limiting nutrients in phytoplankton - zooplankton interactions Antonio Lorena & Gonçalo Marques & Bas Kooijman & Tânia Sousa Stylized facts in microalgal growth interpretation in a DEB context Odo Diekmann & Hans Metz How to lift a model for individual behaviour to the population level? Tjalling Jager & Chris Klok Extrapolating toxic effects on individuals to the population level; the role of Dynamic Energy Budgets Roger Nisbet & Ed Mc. Cauley Dynamic Energy Budget (DEB) theory and ecology: lessons from Daphnia Henk van der Veer & Vânia Freitas & Joana Cardosa & Konstadia Lika & Joana Campos & Myron Peck & Bas Kooijman Temperature tolerance and energetics, a Dynamic Energy Budget-based comparison of North Atlantic marine species. Tineke Troost & Jeroen Wijsman & Sofia Saraiva & Vânia Freitas Modeling shellfish growth with Dynamic Energy budget (DEB) models: an application for cockles and mussels in the Oosterschelde (SW Netherlands) Bob Kooi & Jaap van der Meer Bifurcation theory, adaptive dynamics and DEB-structured populations of iteroparous species. http: //www. bio. vu. nl/thb/deb/course/PTRS. html
J. Sea Res. 2011 • Alunno-Bruscia, M. , Veer, H. van der and Kooijman, S. A. L. M. The Aqua. DEB project (phase II): what we’ve learned from applying the DEB theory on aquatic organisms • Jusup, M. , Matsuda, H. and Kooijman, S. A. L. M. Applicability of Dynamic Energy Budget approach to cultivation of bluefin tuna (Thunnus thynnus) • Kooijman, S. A. L. M DEB-based body mass spectra for planktontic consumers • Mateus, M. , Domingos, T. and Kooijman, S. A. L. M Can we reach consensus between marine ecological models and metabolic theories in ecology? A look at primary producers. • Lika, K. and Kooijman, S. A. L. M. The topology of energy allocation • Lika, K. , Freitas, V. , Veer, H. van der and Kooijman, S. A. L. M. Marine species diversity as reflected by DEB parameters. • Pecquerie, L. , Augustine, S. , Jusup, M. and Kooijman, S. A. L. M. Understanding growth patterns of fish larvae in the context of the DEB theory. • Pecquerie, L. , Kooijman, S. A. L. M. and Nisbet, R. M. The variability of salmon life histories in a DEB context. • Saraiva, S. , Sousa, T. , Alunno-Bruscia, M. , Pouvreau, S. , Meer, J. van der and Kooijman, S. A. L. M. From individuals to ecology in mussel energetics.
Ecology 2012 ?
Lisbon 2011/04/13 -15 auditorium IST 2011/03/30 -04/12 (wed-tue) DEB course, 2011/04/16 (sat) discussions We can recruit speakers from the PTRS/JRS-pool 23 "expressions of interest" at 2010/04/24, never has been that high = Steering committee: selection of keynote speakers + scientific and organising committees: Tiago Domingos, Tania Sousa, Bas Kooijman = Scientific committee (chaired by Tiago): selection of speakers on the basis of submitted abstracts: Tiago Domingos, Tania Sousa, Goncalo Marques, Bas Kooijman, Marianne Alunno-Bruscia, Jaap vd Meer, Henk vd Veer, Tjalling Jager, Jean-Christophe Poggiale, Roger Nisbet, Stephane Pouvreau = Organising committee (chaired by Tania): logistics Tiago Domingos, Tania Sousa, Goncalo Marques, Nuno Sarmento, Sonia Barbosa = Keynote speakers: Michel Loreau (opening) Mike Kearney, Jaap vd Meer, Marianne Alunno-Bruscia, Tom Anderson = Welcome: Tiago Domingos & Tania Sousa; Closure: Bas Kooijman
Texel 2013/04/13 -27 NIOZ Computational Science workshop at the Lorentz Center on DEB Leiden 2010/04/01 -13 1 -2 week meetings, 30 -60 junior and senior researchers. Dr. Henriette Jensenius (jensenius@lorentzcenter. nl, 071 -5275580) http: //lorentzcenter. nl/infoorg. php 41 potential candidates (in computational sector): Morten Alver N Tom Anderson GB Pierre Auger F Starrlight Augustine F Cedric Bacher F Melika Baklouti F Hugo vd Berg GB Martin Boer NL Sandrine Charles F Odo Diekmann NL Tiago Domingos P Yoan Eynaud F Ulrike Feudel D Ido Filin Fin Matz Gyllenberg Fin Tjalling Jager NL Marco Jusup Jap Tin Klancjek Kro Bob Kooi NL Bas Kooijman NL Ingeborg van Leeuwen S Dina Lika G Goncalo Marques P Irene Martins P Jaap vd Meer NL Hans Metz NL Erik Muller USA Roger Nisbet USA Erik Noonberg USA Laure Pecquerie USA Jean-Christophe Poggiale F Eric Rannou F Joao Rodrigues P Andre de Roos NL Pedro Santos P Sofia Saraiva P/NL Tania Sousa P Tineke Troost NL Susana Vinga P Jeroen Wijsman NL Elke Zimmer NL
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