3 D II ATOM ATOM ATOM ATOM ATOM
- Slides: 24
Основные этапы расшифровки 3 D-структуры II. Вычисления и моделирование ATOM ATOM ATOM ATOM ATOM ATOM 188 189 190 191 192 193 194 195 196 197 198 199 200 201 202 203 204 205 206 207 208 N CA C O CB CG CD CE NZ N CA C O CB CG CD 1 CD 2 LYS LYS LYS GLY GLY LEU LEU A A A A A A 27 27 27 28 28 29 29 -35. 123 -35. 949 -36. 907 -37. 292 -36. 706 -37. 635 -37. 718 -38. 234 -38. 418 -37. 102 -38. 068 -37. 531 -36. 321 -38. 399 -38. 000 -37. 661 -38. 320 -39. 135 -38. 918 -40. 273 -38. 051 GLY LEU LEU A A A A 28 29 29 -36. 32 -38. 39 -38. 00 -37. 66 -38. 32 -39. 13 -38. 91 -40. 27 77. 795 78. 814 78. 113 76. 978 79. 638 80. 765 82. 122 82. 152 83. 510 78. 672 78. 114 77. 128 76. 902 76. 581 75. 559 74. 380 74. 195 75. 187 75. 630 75. 849 74. 608 76. 92 76. 58 75. 55 74. 38 74. 19 75. 18 75. 63 75. 84 11. 208 11. 849 12. 808 12. 588 10. 758 11. 277 10. 499 9. 034 8. 535 13. 993 14. 937 15. 942 16. 023 16. 790 17. 744 16. 879 15. 864 18. 665 20. 108 20. 760 20. 847 16. 02 16. 79 17. 74 16. 87 15. 86 18. 66 20. 10 20. 76
Основные этапы расшифровки 3 D-структуры И наконец ATOM ATOM ATOM ATOM ATOM ATOM 188 189 190 191 192 193 194 195 196 197 198 199 200 201 202 203 204 205 206 207 208 N CA C O CB CG CD CE NZ N CA C O CB CG CD 1 CD 2 LYS LYS LYS GLY GLY LEU LEU A A A A A A 27 27 27 28 28 29 29 -35. 123 -35. 949 -36. 907 -37. 292 -36. 706 -37. 635 -37. 718 -38. 234 -38. 418 -37. 102 -38. 068 -37. 531 -36. 321 -38. 399 -38. 000 -37. 661 -38. 320 -39. 135 -38. 918 -40. 273 -38. 051 77. 795 78. 814 78. 113 76. 978 79. 638 80. 765 82. 122 82. 152 83. 510 78. 672 78. 114 77. 128 76. 902 76. 581 75. 559 74. 380 74. 195 75. 187 75. 630 75. 849 74. 608 11. 208 11. 849 12. 808 12. 588 10. 758 11. 277 10. 499 9. 034 8. 535 13. 993 14. 937 15. 942 16. 023 16. 790 17. 744 16. 879 15. 864 18. 665 20. 108 20. 760 20. 847 Программы для визуализации и анализа 3 D — Ras. Mol, Py. Mol, SPDBViewer, Web. Mol, . . . . . . . . . .
Формат PDB-файла HEADER TITLE COMPND COMPND SOURCE KEYWDS EXPDTA AUTHOR REVDAT JRNL JRNL COMPLEX (DNA-BINDING PROTEIN/DNA) 27 -APR-97 1 WET STRUCTURE OF THE PURR-GUANINE-PURF OPERATOR COMPLEX MOL_ID: 1; 2 MOLECULE: PURINE REPRESSOR-GUANINE-PURF-OPERATOR; 3 CHAIN: A; 4 MOL_ID: 2; 5 MOLECULE: DNA (AACGAAAACGTTTTCGT); 6 CHAIN: B; 7 ENGINEERED: YES; 8 BIOLOGICAL_UNIT: HOMODIMER MOL_ID: 1; 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; 3 MOL_ID: 2; 4 SYNTHETIC: YES DNA-BINDING REGULATORY PROTEIN, REPRESSOR, 2 COMPLEX (DNA-BINDING PROTEIN/DNA) X-RAY DIFFRACTION M. A. SCHUMACHER, A. GLASFELD, H. ZALKIN, R. G. BRENNAN 1 12 -NOV-97 1 WET 0 AUTH M. A. SCHUMACHER, A. GLASFELD, H. ZALKIN, R. G. BRENNAN TITL THE X-RAY STRUCTURE OF THE PURR-GUANINE-PURF TITL 2 OPERATOR COMPLEX REVEALS THE CONTRIBUTIONS OF TITL 3 COMPLEMENTARY ELECTROSTATIC SURFACES AND A TITL 4 WATER-MEDIATED HYDROGEN BOND TO COREPRESSOR
Формат PDB-файла ATOM ATOM ATOM ATOM ATOM ATOM ATOM 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 N CA C O CB OG 1 CG 2 N CA C O CB CG 1 CG 2 CD 1 N CA C O CB CG CD CE NZ N THR THR ILE ILE LYS LYS LYS ASP A A A A A A A 3 3 3 3 4 4 4 4 5 5 5 5 5 6 16. 514 17. 180 16. 995 16. 888 18. 658 18. 953 19. 796 16. 880 16. 614 15. 180 14. 824 16. 557 16. 613 15. 242 16. 468 14. 363 13. 005 13. 126 12. 360 12. 399 11. 236 11. 427 10. 112 10. 059 14. 102 -2. 279 -2. 102 -0. 675 -0. 476 -2. 818 -3. 305 -1. 970 0. 318 1. 653 1. 537 2. 204 2. 686 4. 069 2. 611 5. 127 0. 675 0. 429 -0. 115 0. 211 -0. 681 -0. 268 -0. 757 -0. 760 -1. 825 -0. 973 12. 062 13. 371 13. 903 15. 109 13. 510 14. 848 12. 934 13. 028 13. 545 14. 149 15. 125 12. 441 13. 040 11. 664 11. 966 13. 544 14. 018 15. 426 16. 357 13. 198 12. 361 10. 930 10. 137 9. 080 15. 597 1. 00 1. 00 1. 00 43. 86 45. 43 48. 26 56. 27 61. 61 40. 35 66. 69 35. 25 31. 81 36. 74 23. 77 32. 25 32. 26 22. 31 56. 11 41. 48 40. 63 43. 60 45. 74 41. 30 61. 61 66. 72 90. 19 69. 42 38. 66 N C C O C C C C N N
Ras. Mol ab initio http: //www. rasmol. org/
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