2 nd International Conference on Fish Telemetry Big
2 nd International Conference on Fish Telemetry ‘Big Data’ Unites Oceanographers And Animal Trackers On A Global Scale Grahamstown, South Africa, July 14 -19, 2013 H. Moustahfid 1*, R. M. Branton 2, J. Payne 3, E. Mayorga 4, B. Simons 5, L. Bajona 2, M. Mihoff 2, K. Morton 2 1 US Integrated Ocean Observing System (US IOOS), 2 Ocean Tacking Network (OTN), 3 University of Washington, 4 Northwest Association of Networked Ocean Observing Systems (NANOOS), 5 Southwest Fisheries Science Center( SWFSC) hassan. moustahfid@noaa. gov ; bob. branton@dal. ca
Background The Integrated Ocean Observing System (IOOS) and the Ocean Tracking Network (OTN) both collect, manage and use highly complex information assets, that is ‘Big data’ on a global scale … http: //www. ndbc. noaa. gov http: //members. oceantrack. org
Objectives • Animal acoustic telemetry data and associated products implemented using a content standard so they can be shared between projects nationally and internationally. • Based on input from POST, OTN, GLATOS, Hydra, and AATAMS, with feedback from individual researchers and operators including TOPP and Kintama Research. • Using and combining existing technical IOOS and OTN technical infrastructures.
North East Pacific Ocean Here we describe efforts currently focused on the North East Pacific Ocean whereby data scientists from these two communities are currently attempting to develop and demonstrate data services that could eventually enable animal acoustic telemetry detections to be routinely integrated with environmental data observations and models. Use Emilio’s map here? Data Contributors: Receiver Deployments: Deployments JDF, QCS – Scott Hinch (OTN), WILL – David Welch (KTM) Tag Releases: Releases PSS 2 – Scott Hinch (UBC), Steve Cooke (UW); LIND – Steve Lindley (NOAASWFSC); MOSER – Mary Moser (NOAA-NWFSC); VOGL – Dave Vogel (NRS)
Outline • Parallel ERDDAP and Geo. Server Web Services • Metadata convention for animal acoustic telemetry data exchange • Sample data extracted from the OTN data warehouse using the proposed convention • Example visualizations of the sample data using the NOAA - Environmental Research Division's Data Access Program (ERDDAP) • Linking this data service to ocean models and applications.
Parallel ERDDAP and Geo. Server Web Services
Metadata convention for animal acoustic telemetry data exchange 1. 2. 3. 4. 5. 6. 7. 8. 9. datacenter_attributes project_attributes manmade_platforms receivers recover_offloads tag_releases animals detections tracks
Sample data extracted from the OTN data warehouse using the proposed convention
ERDDAP – list of data sets Use Bob Simon’s graphics on next 3 slides ?
ERDDAP > tabledap > Subset Make A Graph
ERDDAP > tabledap > data • get the data you want, in the format you want, including: csv, net. CDF, kml • web accessible (WAF) ISO 9115 -2 and FDGC. xml metadata files
R Studio - # of tags by year and station
python - len/wgt density of tagged fish
ESRI Data Connector Uses Kelly’s graphs here ….
Closing Remarks Backwards …. Forwards … Defining the specifications • Develop work plan for further OTN and IOOS was hardest part. Creating collaboration to fully and refining a specific data operationalize the system. feed (i. e. OTN) was • Expand user base … – Provide OTN data to AATAMS, relatively easy. The Hydra, ACT and TOPP demonstration services – AATAMS, Hydra, ACT and TOPP provide data to OTN have been implemented • Start blog for R & python and appear useful. development
Data Citations Receiver Deployments … JDF - Hinch, S. , 2012. Ocean Tracking Network Strait of Juan de Fuca Line Metadata and Data Set (POST: Welch, D. , 2004). QCS - Hinch, S. , 2012. Ocean Tracking Network Queen Charlotte Strait Line Metadata and Data Set (POST: Welch, D. , 2004) WILL - Welch, D. , 2006 In: Bolger, James, J. Payne. 2011. Pacific Ocean Shelf Tracking (POST) Program. Tag Releases … HINCH – Hinch, Scott 2006 In: Bolger, James, J. Payne. 2011. Pacific Ocean Shelf Tracking (POST) Program. LIND - Lindley, Steve In: Bolger, James, J. Payne. 2011. Pacific Ocean Shelf Tracking (POST) Program. MOSER - Moser, Mary In: Bolger, James, J. Payne. 2011. Pacific Ocean Shelf Tracking (POST) Program. VOGEL - Vogel, Dave In: Bolger, James, J. Payne. 2011. Pacific Ocean Shelf Tracking (POST) Program. In Ocean Region NEP - Barnes, C. , Grimes, C. 2009. Ocean Tracking Network Northeast Pacific Metadata and Data Series. In Global Atlas Global - Ocean Tracking Network Global Metadata and Data Atlas
The End
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