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http: //emboss. sourceforge. net/ 10/25/2021

EMBOSS interfaces • Command line: Windows, Cygwin • WEB: – Jemboss (needs java web

http: //bioinfo. icgeb. res. in/EMBOSS 10/25/2021

EMBOSS suggested reading • Chapter 12 of “Sequence analysis in a nutshell” (Markel &

EMBOSS Command line • Windows • UNIX 10/25/2021

EMBOSS for UNIX Download EMBOSS-2. 8. 1. tar from course website cd EMBOSS-2. 8.

EMBOSSwin • Copy embosswin-0. 7 -setup into your desktop from course webpage • Double

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10/25/2021

http: //emboss. sourceforge. net/ 10/25/2021

EMBOSS interfaces • Command line: Windows, Cygwin • WEB: – Jemboss (needs java web start) – EMBOSSGUI (needs Apache or other webserver) – now installed locally in ICGEB server 10/25/2021

10/25/2021

http: //bioinfo. icgeb. res. in/EMBOSS 10/25/2021

EMBOSS suggested reading • Chapter 12 of “Sequence analysis in a nutshell” (Markel & Léon • EMBOSS quick guide • “doc” directory for more details – Manual – Programs – Tutorials 10/25/2021

EMBOSS Command line • Windows • UNIX 10/25/2021

EMBOSS for UNIX Download EMBOSS-2. 8. 1. tar from course website cd EMBOSS-2. 8. 1. /configure --without-x CFLAGS=-s make install ENVIRONMENT SETTINGS: (can be included in. bashrc file) PATH=$PATH: /home/CBAG/EMBOSS-2. 8. 1/emboss export PLPLOT_LIB=/home/CBAG/EMBOSS-2. 8. 1/plplot/lib export EMBOSS_DATA=/home/CBAG/EMBOSS-2. 8. 1/emboss/data 10/25/2021

EMBOSSwin • Copy embosswin-0. 7 -setup into your desktop from course webpage • Double click • Follow the instructions • After finishing the setup • Open windows shell • Proceed with examples 10/25/2021